| ||||||||||||||||||||||||||||||||||||||||
| Pairwise sequence scores | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Consensus score | 5575 | VNG0218 | rrnAC1951 | Hmu0526 | NP0160A | hla0315 | HQ1328A | HVO_0620 | Hbo0900 |
| 2674 | VNG0218 | 4191 | 2316 | 2296 | 2283 | 2370 | 2132 | 2268 | 2339 |
| 4146 | rrnAC1951 | 2316 | 5784 | 4032 | 3602 | 3322 | 3326 | 3522 | 3558 |
| 4023 | Hmu0526 | 2296 | 4032 | 5656 | 3462 | 3346 | 3219 | 3395 | 3521 |
| 4086 | NP0160A | 2283 | 3602 | 3462 | 5496 | 3408 | 3283 | 3502 | 3493 |
| 4194 | hla0315 | 2370 | 3322 | 3346 | 3408 | 5792 | 3378 | 3617 | 3684 |
| 4074 | HQ1328A | 2132 | 3326 | 3219 | 3283 | 3378 | 6103 | 3638 | 3898 |
| 4383 | HVO_0620 | 2268 | 3522 | 3395 | 3502 | 3617 | 3638 | 6012 | 4230 |
| 4546 | Hbo0900 | 2339 | 3558 | 3521 | 3493 | 3684 | 3898 | 4230 | 5806 |
853 symbols consensus -----------------R-TAG-DDTSAPAVPAPVPPDDPAAWYAPDVRAQYEVAPGVVA #oth 111111111122433435655565655234..2.31.2234.....3.2312125.1212 VNG0218 :::::::::::::::::-:---:---M::L::P:T::GSD::::::A:T:::T:H::I:: rrnAC1951 :::::::::::MGSLKA:M::QA:TET::V::T:T:::AAD::::::::E:D::Y::::V Hmu0526 :::::::::::::::::ML:E:EGE::::T:::::T::::N::::::::D:D:IH::::V NP0160A :::::::::::::::::-:---:MYSD::V::::E:::S:::::::::HDH::I:::::: hla0315 ::::::::::VSDGPTL:IVDED::DPGG:::::::::::E::::::::::::SE::::: HQ1328A :::::::::::::::MSQNKTDIT::TLC:::::L::NS:E:::::Q::S:H::T:::II HVO_0620 MPTQGDNAGSESPTPTLEFG:SSTSGA:G:::::::::::R:::::T::S::::::DT:V Hbo0900 :::::::::::MSGRPAAESG:TAR:::AE::P:L::::GD:::::::::::::V::::: consensus TVRDRDD--GFRYDVREPLLSARDEDALATVRDHFAGANLRR--PLTREGAAERAEGGFD #oth .13452431115.321216.2333331.431242.231544211.1..21242.445.24 VNG0218 ::TA::GA:RPT:EL:R:Q:::::A::::D:CEQ::D:T:PP::::::AD:RD:LAA::E rrnAC1951 :::RGRS:::::::::D:V:::SET:::S::ES::::::IE::::R:::::V::MN:::: Hmu0526 ::TETAA::::E::L:D::::VD:A::::::EEY::D:HVD::::R:::::I::V:S:L: NP0160A :::SD::::::V:E::D:S::TAA:TD:R:::R::E::E:S::::R::::::::FRE::: hla0315 :::E::GG:R:G::::::P::GA:DR::DR:::::S:VRH::::::::V:VI::::S::E HQ1328A :II:QA:HV::::QI:::::DTDS:::::EI:AY::::::ESGR::::::TT:::TH:LR HVO_0620 :IS:A:H::::D:A:::AT:G::ET:::E::::::STVVR:::::::::::VS:::T:LS Hbo0900 :I::DAHGV::::E:H::G:G::E:A:::R:::::SVV:R::::::::::T::::A::VP consensus PKYRRVIDRLLDASPAA--RRRIEYHALCELRCLGDLTPLALDDRIEVADVG----DDEL #oth 4.13.232112.41232111..22212.322311131.14.1.32122112312243351 VNG0218 A:H::::AA:T::T:::::::::TV:::::A:::::::GV:A:::VTA:VAD:::::ETV rrnAC1951 A:H:::::::V:::::S:::::V:::::SS:A:FD::::Y:::S::D::::T::::::GV Hmu0526 E:HQ::::::V:C:::S:::::LD:::::S:A:::E:::Y::::::D:::L:::::SGSV NP0160A R::D::V:::V:C::SG:::::LT::L:A::K:::E:::H::::E::::::A::::G::: hla0315 :::E:AL:::::::R::::::::D::::RD::L:::V::::::G:::::::::::DER:: HQ1328A S::::::N:I::K:IIGGR::::T:YV:RDFQL::SV::I:::EQ::IV:LD:DEI::V: HVO_0620 :::::IF:::::LT:T::::::V:R:::S:::L::AV:::::::::::V:A:RGDGSER: Hbo0900 ::::::F:::::V::::::Q:::::Y::::::L::EV:::::::::D:V:::RDDE:GT: consensus VVHTEDYAPAETGLDADAEFADRFAAERLARYTVPFAGFDVPVVIYRDRLLGDDAFTTKY #oth 2..12321.23.4344135233.3221.24412.4.412212.232.233112.2.321. VNG0218 ::::DAQP::T:::P:NTPAH::LR:T:I:A:::::R::::::R:::TPGDDA:::::T: rrnAC1951 ::::D:::::::D:GP:PAYLN:::S::VE:H::R:Q::EI:::V::EH:::A:P::::: Hmu0526 R:::D:F:::::D::P:T::L::::S:::EQH::T:HE:EI::IV::ENV::::P::::: NP0160A L::LR:::::R::I:-::D:V:::S::::D::::S:::YE::::R::::M::A:::ER:: hla0315 :::::TF::L:::I:::::YVE:V::::::::A:G:::LS:E::VA:E::::S:::E::: HQ1328A :::::::::VV:S:S:NVR::S:V:S:::KS:V:T::::::D:::H::H:::::R:YA:: HVO_0620 ::::::F:::T:TF:S:VS::::I::::IDH:::::::Y::D::::::::::::R:A::: Hbo0900 :::::N::::T:AYRT:::::::V:G:::RH:::::C::::D::LH::H:::::R::::: consensus AVREPDLLPGDEELIEECKERIWEANV--DG--VVDDRRAFVRERARELLSRRLTARNTR #oth ..1..121...231.22..411.2232112222323.253212221141.1.111221.2 VNG0218 ::::::R::::DAR:AA::D:::TNG:ATGDSDAG::HA:ATAD:::S::A::H::PK:: rrnAC1951 ::::::::::::Q:::V::::V::TG:::::::::Q::VD:::::::S::A:Q::V:::T Hmu0526 ::::::Q:::::::::A::T:V:::SI:::::::LE:EV::::D:::T::::Q::I:::: NP0160A ::L:::R::::D:::A:::T::::TG:::::ESS:::::SV::::GE::::::::::::: hla0315 ::::::::::::A::::::Q::::TT:::N::::::::E:::A:H::RF::::::::::: HQ1328A ::L::A::::::T::S:::KH::G::::::E::L:A::T:::QKI:::F:::::AVK::Q HVO_0620 ::L::::V:::A:::::::::::::::::ND::::A::IE:::D::::F::::::::::: Hbo0900 ::L::::::::D:::A::::::::::A::GE::::E:::E:::::::QF::::::::::: consensus AWLDAAAHRLRAALAEYGLAVPPVDRRFADDRLDDLAYYVLRDLVGEGVLTVPIRDPNLE #oth 3.431233.3.4.11231212...14121311121.4..11..21.214..1.1..22.. VNG0218 H:CG:I:D:V:E:V:DR:P:::::G----::HVA::::::V:::::DAE::I:::::::: rrnAC1951 E:V:::RY:::S::::LD:::::::H::::::::::L:::::::::Y:K:::::::HT:: Hmu0526 ::F:::RY:::T:::::D:T:::::::::::::E::L:::::::::Y:K::::V:::T:: NP0160A ::::::E::::::::::::::::::G::::G:::A:T:::::::::Y:Q::I:::::::: hla0315 :::G:::::A:S:::DR::::::::S:Y:H:::::::::::::F::::I::::::::::: HQ1328A T:IAR::::S:Q:::RIDV:A:::G::Y:KG:::::I::I::::I:::::::::::S::: HVO_0620 ::V::TSF:V::::S:::::L::::::::E::::::V::::::Y:::::::::::::H:: Hbo0900 :::E:TEF:V:T::::::::L::::::::E::::::V::::::Y:::::::::::::::: consensus DIEANRVGERIKVVPRADVGD------------GGRVPTNLAFDDETAFVNVVTQLAAAD #oth .1.....1..1..21.4436542221111111124.2....4112.44.111..2...4. VNG0218 :V::::::::V:::A:DR:HAA:::::::::::DD:I::::VL:::QR::DL::G:::Q: rrnAC1951 :::::::D::V::L::::L:H::::::::::::D::::::::::S:A:::::::::::D: Hmu0526 :::::::D::::::::L:::H::::::::::::NE::::::C:ES:R:::::::K:::D: NP0160A ::::::::::::::::G----::::::::::::D::E::::R::S:S:::::::::::N: hla0315 :V::::::::V:::::TSILQGAGAGDENSRDA:R:::::::::::ST::::::G:::R: HQ1328A :::::::::::::::::::V:A::::::::::::E::::::S:EN::T:::::::::::: HVO_0620 :V:::::::::::I:::::TGH:::G::::::::L::::::V:E:::E:T:::::::::: Hbo0900 ::::::::::V::I:::GIA:DSTVG:::::::::::::::::E:::S:::::::::::: consensus GVELNASRPSAKVNLDPD--GV-------DETIRCAVALPVISEGGPHVSIRKQSADALT #oth .1..1112.1....132211.3123323423.........2...2...1.....22121. VNG0218 ::::::AT:A:::::E:::::::::::AD:V:::::::::A:::::::::::::A::::: rrnAC1951 :::::::N::::::I::::::D::GLHDA:D:::::::::T:::::::I::::::G::M: Hmu0526 :T:::::T:::::::S:E:::::::::::E::::::::::T:::D:::I::::::P:PM: NP0160A ::::S:::::::::::L:::::::::::::Q:::::::::T:::D:::I:::::AP:V:: hla0315 :T:::::T::::::::V::::::::::::::::::::::::::::::::::::::::::: HQ1328A ::::SS:::::::::E:::::IDDTVHEHS::::::::::::::S:::::::::A:KP:: HVO_0620 :::::::N:::::::R:GAV:GDPASADT:::::::::::::::::::::::::TG:V:: Hbo0900 :::::::::::::::R:E:::I:::::::E:::::::::::::::::::::::::::PM: consensus PVDLVERGSLPTELVALLWLLYEHHRVVLFSGPTGVGKTTLMNAHMPFIPYDDRPISIDE #oth ....2531222321.1...12..211....2.1..1.....1.1.1..11121..1.... VNG0218 ::::LRQ:::TAGI::::::A:::::::::::::::::::::::::::V:F::::V:::: rrnAC1951 :::::Q:D:::::::::::::::S:G:::::::::A:::::::::::::::R:::::::: Hmu0526 ::::I::DA::::::::::::::::G::::C::::::::::::::::::::R:::::::: NP0160A ::::::S::::::::T:::::::::G:::::::::A:::::::S::::VS:E:::V:::: hla0315 ::::ID::T:SPD::T::::::::RG::::A::::::::::L:::T::::F::::V:::: HQ1328A ::::IKS::I:::::::::::::Y:::::::::::A:::::L::::::::::H::::::: HVO_0620 ::::::S::VS::::T::::C:::::::::::A:::::::::::::::V:::H::::::: Hbo0900 :::::HLDA::I:::::::M::::::::::::::::::::::::::::::::H::V:::: consensus GSREVRLPHETGVSLTTRDHEREFKRVSMADLMTEANYLNPDVEVIAEINTPASFETFAE #oth .....41.....1..1..1.142212.1.11..122......1.....1..21..21112 VNG0218 :::::::::::::::S::E::QA:::::::::::AT::::::I::::::::R::::S::Q rrnAC1951 ::::::I:::::::::::::::DHR::T::::::QC::::::I::::::::A:::::::: Hmu0526 :::::FI:::::::::::::::DHR::T:::::::C::::::::::::V::A:::::::: NP0160A :::::L::::::::::::E:QE:::N:::::::::T::::::::::::::::E:::::G: hla0315 :::::::::::::::::::::DAY:A:::SE::A:::::::::::::::::::::::::: HQ1328A :::::Y::::::::::::E::D::::::::::::::::::::I:::::V::::::Q:Y:D HVO_0620 :::::H:::::::::::::::S:::::T::::::::::::::::::::::::E::A:::: Hbo0900 ::::::::::::I::::::::S::::::::::::::::::::::::::V::::::::::: consensus TLNTGHGVIGTTHAEDIETLVNRVVEQGLPPYLLREIDLVVFPRRVDGERYVGEVVELVS #oth 2.1..1133111113122411111213111411131311211134122212123211324 VNG0218 I::::------------------------------------------------------- rrnAC1951 ::::::::::::::G:::S:::::I:K:::T:::E:::::::::H::::::::::::F:N Hmu0526 :::::::LL:::::::V:::::::::::::::::Q::::L:::K::GED:F::::::I:D NP0160A V:Q:::::L:::::::::K:::::::K::::::::::::::::KH:::D:F::S::::L: hla0315 ::::::::::::::::V:A:::::I:R:::A:::::V:::::::Q:::::::SRA:::L: HQ1328A I::::::AV::::::::H::::::::::::V:::::L::::::::::::::::S::::L: HVO_0620 ::::::::::::::A:::::::::I:::::::::::L::::::HK:::::::S::::::P Hbo0900 V:::::::::::::::::::::::::::::T:::::L::::::H:::::::::::::::D consensus EAEYDAL-----------P-AARAGVIEKDGTTLYWNTVLWRDPDGSFELAYDHPQLGDP #oth 355353211111111111357337222413362322132441442142533343254332 VNG0218 -------:::::::::::-:---------------------------------------- rrnAC1951 DPSVVE-:::::::::::SGND:S:T:H:::::IH::S:C::R:::N:::::::::F::D Hmu0526 :TT:R::D::::::::::RD:D:C::VR:ADA:V:::::CT::RN:E::::GLVGEGS:: NP0160A :Q:AA:::::::::::::-:D:PVET:::::S:IHY:R::D:T:::GW:F::E::D:::: hla0315 ::::E::DPEATRSPTGN:KHGG:::VD:GTEAV:Y:::A:::A::E:RFP-GA:ESDA: HQ1328A A:D:ET:::::::::::::SS::T:::::A:::::Y::I:::ET::::AM:::::S::G: HVO_0620 :S:::ET:::::::::::-:WG:R:::::::R::H::::GR:T:::::D:S:E::::::D Hbo0900 :SG::::::::::::::::PT::K:TV::G:Q::::::::::ET::::S::H:::R:::D consensus H-------RRL--RAFHRIADATDRDVDAVEAEFHRKHRYVEYLVREGVTDFDRLFGFLA #oth 412211114234444251225532342442344153222112111213332415213313 VNG0218 -:::::::---::----------------------------------------------- rrnAC1951 R::::::::QVDTGI:D:LS:LR:EP:S:::DA:::R::::Q:::Q::L::::D:::V:: Hmu0526 I:::::::---::H::E:L::Q::QT::G:::M:E:R::::Q:::Q::I::A:E::AL:: NP0160A T:::::::A:NGMY:LS:L:QRLN:PIAD:QD::::::G::::::::::S:I:S:::::G hla0315 TASREG:::::::H:LA::::H:::::::::S::AS:R:::::::::::D:::A::E::: HQ1328A :AATEGTQD::AH:V:::::T:::Q:I:KIARS:RNR::::Q:::::D:::A:::::::: HVO_0620 ::::::::::VGV:L:::::E::::::E:::R:::::::::::::::QI::V:::::::S Hbo0900 ::::::::Q::SH:V:::::A::::E::::::::L::RG::::::::D:SE:::V::::S consensus DLRTDEAATVERVRRQMAEEDD----E--G------------------------------ #oth 113121111211441342554465433443433312222222221222111111111111 VNG0218 ----------------------::::-::-:::::::::::::::::::::::::::::: rrnAC1951 ::E:N:::::::L:::AGTP:SPQLEVGT:DD:::::::::::::::::::::::::::: Hmu0526 ::K:::::::::LH::R:D:PTVRGE:ID:D::::::::::::::::::::::::::::: NP0160A ::::::::::::IQ::A:AD:-::::-::-:::::::::::::::::::::::::::::: hla0315 ::::::::::::AA:T:GG:GRS:::-::-:::::::::::::::::::::::::::::: HQ1328A :::::::::I:::::RQ:TP::NHTY:ATAQDTPDKKQSDQERNEDCNQETNTNTNTNKT HVO_0620 :::::::::::::::R:::R:SADGDSAARGGVDDHTHHRDRDDEADP:::::::::::: Hbo0900 :::::::::::::::::::SA:ETED:TE:ETDA:::::::::::::::::::::::::: consensus ------------- #oth 1111111111111 VNG0218 ::::::::::::: rrnAC1951 ::::::::::::: Hmu0526 ::::::::::::: NP0160A ::::::::::::: hla0315 ::::::::::::: HQ1328A SMSAESDNAEQGI HVO_0620 ::::::::::::: Hbo0900 :::::::::::::