|
Pairwise sequence scores | |||||||||
---|---|---|---|---|---|---|---|---|---|
Consensus score | 4189 | rrnAC0637 | Hmu0973 | VNG0481 | NP1226A | hla2317 | HVO_1380 | Hbo0171 | HQ2400A |
3698 | rrnAC0637 | 4219 | 3508 | 3441 | 3491 | 3350 | 3344 | 3398 | 3298 |
3578 | Hmu0973 | 3508 | 4234 | 3299 | 3317 | 3201 | 3272 | 3302 | 3257 |
3699 | VNG0481 | 3441 | 3299 | 4944 | 3498 | 3401 | 3461 | 3441 | 3381 |
3662 | NP1226A | 3491 | 3317 | 3498 | 4222 | 3449 | 3342 | 3442 | 3368 |
3636 | hla2317 | 3350 | 3201 | 3401 | 3449 | 4218 | 3393 | 3455 | 3462 |
3661 | HVO_1380 | 3344 | 3272 | 3461 | 3342 | 3393 | 4194 | 3546 | 3367 |
3779 | Hbo0171 | 3398 | 3302 | 3441 | 3442 | 3455 | 3546 | 4207 | 3600 |
3660 | HQ2400A | 3298 | 3257 | 3381 | 3368 | 3462 | 3367 | 3600 | 4160 |
653 symbols consensus ------------------------------------------------------------ #oth 111111111111111111111111111111111111111111111111111111111111 rrnAC0637 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu0973 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: VNG0481 MLVGRPPTRRFAADPPGRDRDGYREDVYDAVAEQVARYNSDAPVVLGLDWGHTNPVAPLP NP1226A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: hla2317 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HVO_1380 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo0171 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HQ2400A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: consensus --------------------------------MFDPDELAAIREAKAEWEEETLGPTLDR #oth 11111111111111111111111111111112.11211.22..23234.1231342.12. rrnAC0637 :::::::::::::::::::::::::::::::::::::::EE:::S::Q:::DDVQ::V:: Hmu0973 ::::::::::::::::::::::::::::::::::::E::::::AE:ER:H:::AR::::: VNG0481 LGREVTVDPGAQRVVVREERTRIKTASAVRRG:Y:E:D:::::DGRED:::::::::::: NP1226A :::::::::::::::::::::::::::::::M::N::D:D::::GHDQ:::::Y:::VE: hla2317 :::::::::::::::::::::::::::::::::Y::E::D:::D::ES::SG:Y:E:V:: HVO_1380 :::::::::::::::::::::::::::::::::::::::EE:::::::::D::::::::: Hbo0171 :::::::::::::::::::::::::::::::::::::::DQ:::::::::::::S:::E: HQ2400A :::::::::::::::::::::::::::::::::::D:D:::::DG:R::::K::NS::N: consensus FGERKEEFTTDTGGQEVDRLYTPADVADLDYEEDIGFPGEEPYTRGVYPTMHRGRLWTMR #oth ....214.2...2.33.111...1.22.52.33.2.2.112.......1.11..1..... rrnAC0637 ::::::T:::::E:H::::::::::IS:::::::L::::Q::::::::::GY:::::::: Hmu0973 ::::E:Q:::::A:R:::::::::::::::::::L:::A:::::::::S::Y::Q::::: VNG0481 ::::::S:E::::::S:::::::D::::R::DA::::::::::::::::::Y:::::::: NP1226A :::::D::::::::::::P:::::::::::::D:::Y:::P:::::::S::::::::::: hla2317 ::::::S:::::::::::P::::::IP:H::R::L:N:::::::::::S::::::::::: HVO_1380 ::::::::::::::NV:K:::::D:-::V::D::V:::::K::::::::::::::::::: Hbo0171 ::::ED:::::::::::::::::D:I::QN:C::V::::::::::::::::::::::::: HQ2400A ::::Q:H:S::::::T:::V::::::::IE::S:::::::::::::::S::::::::::: consensus QYAGMGTAAETNERFNYLIDQGQSGLSMAFDLPTQMGYDSDAAMAAGEVGKSGVAIDSLR #oth ....1...2......2..222.11...1.......1....133..2....12.....1.4 rrnAC0637 ::::::::T:::::::::L::::T:::::::::::::::::H:::::::::T:::::::D Hmu0973 :::::::::::::::Q::L::::T::::::::::::::::ND:::::::::T:::::::: VNG0481 ::::::::::::::::::L:E::T::::::::::::::::::T::Q:::::::::::T:A NP1226A ::::::::D:::::::::M:E::T:::::::::::::::::S:::E:::::::::::::K hla2317 ::::::::::::::::::::::S::::::::::::::::::::::E::::R::::::T:D HVO_1380 ::::F::::::::::R::::N:S::::L::::::::::::::M::::::::::::::::H Hbo0171 :::::::::::::::::::EN:S::::::::::::K:::::::::::::::A:::::T:: HQ2400A :::::::::::::::R:::NE:S::::::::::::K::::::S::::::::A:::::T:: consensus DMETVFDGIPLDEVSTSMTINAPASVLLAMYIAIGDKQGVPREELRGTIQNDILKEYIAR #oth .1.1.....1.1............2......1.3..1...2.22........11...... rrnAC0637 :::::::::::::::::::::::::::::::::V::::::D:::::::::::V::::::: Hmu0973 :::V:::::D:G:::::::::::::::::::V::::Q:::::D:::::::::V::::::: VNG0481 :::::::::::::::::::::::::::::::::V::Q:::D::::::::::::::::::: NP1226A :::::::::::::::::::::::::::::::::V::::::D:T::::::::::::::::: hla2317 :F::::::::::::::::::::::A::::::::M:::::::::Q:::::::::M:::::: HVO_1380 :::::::::D:G::::::::::::A::::::V:L:::::::::::::::::::M:::::: Hbo0171 :::V::::::::::::::::::::G::::::::::::::::::Q:::::::::::::::: HQ2400A :::V::::::::::::::::::::A:::::::::::Q:::S::T:::::::::::::::: consensus NLYIYPPEPSMRLITDIFEFCAAETPKFNTISISGYHIREAGSTAAQEIAFTLGDGIEYV #oth .11.1...1...2........24.2.2...............1.....2.....1..1.. rrnAC0637 :TF::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu0973 :T::::::::::I::::::::SQ:V:::::::::::::::::::::::::::::N::::: VNG0481 :T::F:::::::V:::::::::::::::::::::::::::::A::::::::::::::::: NP1226A :T::F:::::::I:::::::::E:V:N:::::::::::::::A:::::L::::::::::: hla2317 ::::::::::::::::::::::G:I:S:::::::::::::::::::::V::::::::::: HVO_1380 ::::F:::::::::::::::::::::::::::::::::::::::::::V:::::N::Q:: Hbo0171 ::::::::S:::::::::::::E:::N::::::::::::::::::::::::::::::::: HQ2400A ::::::::S::::::::::::GT:::N:::::::::::::::::::::::::::N::::: consensus QAAIDAGLDVDDFAPQLSFFFNAHNNIFEEVAKFRAARRMWAKIMEERFDAQNPKSKQLK #oth 11.21...1..1.........111..11..1........1.12.111..1132.1.1... rrnAC0637 E:::E::::::E:::::::::ASY:::::::::::::::L:::::D:::::::::::::: Hmu0973 ET:LE::::::::::::::::A:Y:::::::::::::::L::E::D::::PDD::::::: VNG0481 :T:L:::::::E:::::::::::::::L::::::::::::::T::::::::::::::::: NP1226A E::::::::::E::::::::::::::VL:::::::::::::Y:::::::::EK:A::::: hla2317 :::::::::::E::::::::::::::::::A:::::::::::T::::::::::::::::: HVO_1380 E::V:::::::::::::::::::::::L:::::::::::::::::::::G:E::::M::: Hbo0171 :::L::::::::::::::::::::::::::::::::::::::::::D::G:E:::::::: HQ2400A ::::::::N:::::::::::::::::::::::::::::::::::I:D::::T:::::::: consensus FHTQTAGSTLTAQQVENNVVRVAYQALAAVLGGTQSLHTNGKDEALSLPTEQSVRTALRT #oth .....1........11..1...2......................221...3........ rrnAC0637 ::::::::::::::I:::::::S::::::::::::::::::::::IG::::::::::::: Hmu0973 :::::::::::::::::::::::::::::::::::::::::::::VG::::D:::::::: VNG0481 ::::::::::::::ID::I::::::::::::::::::::::::::::I:::E:::::::: NP1226A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: hla2317 :::::G::::::::I:::::::S:::::::::::::::::::::::A::::::::::::: HVO_1380 :::::G:::::::::::::::::::::::::::::::::::::::::::::K:::::::: Hbo0171 :::::G::::::::::::::::G::::::::::::::::::::::::::::::::::::: HQ2400A :::::G:::::::::::::::::::::::::::::::::::::::::::::::::::::: consensus QQILAHESGAADTIDPLAGSYYVESLTDEIEAEAFEILDEVDRRGGMRRAVESQWVQRQI #oth .........1.......1......3...21131.2211111.3....1311131...11. rrnAC0637 :::::::::::::::::::::::::::::L::::R:LIE:::E::::::SI:E::::::: Hmu0973 :::::::::V:::::::G:::::::::::LA:D:R::::T::D:::::::I:D::::::: VNG0481 ::::::::::::::::::::::::G:::D:::::QA::::::S:::::::::D::::::: NP1226A :::::::::::::::::::::::::::::L:Q::::L:E:A:D:::::Q:::N::::K:: hla2317 ::::::::::::::::::::::::N:::G::ED:::::E::::::::LE::K:::::::: HVO_1380 ::::::::::::::::::::::::A:::D::D:::DL:::::E::::LD::KN:::::E: Hbo0171 :::::::::::::::::::::::::::::L:::::D:::::::::::LD::::::::::: HQ2400A :::::::::::::::::::::::::::::::::::::IE::::::::LE::K:R:::::: consensus QDVAFERQQEIEAGERIIVGVNEFQVD-EEPEVDIEEVDEEDEQRQRERLDAVKEERDDE #oth ....11..1.11311.1.....112.11.12541211.2334143.5231432131..31 rrnAC0637 ::::::::R:Q:::D::::::::Y::E:::G:Q:::::::AV::A:QDNVAT:R:::::: Hmu0973 ::::Y:::::Q:S:D:::::::::T:::::EP:E::::::TL:A::H:::::LR:::::D VNG0481 :::::D::::::EK::V:::::::E::D::::A:::::TAD::R::I:H:ND::GD::S: NP1226A :::::::::::DS:D::::::::::::::D:KE:::::SD:QQRK::::VQELRA:::S: hla2317 ::::::::R:::D:::V:::::K:E:::::::M:L::::P:Q::N:::::E:::AD::SD HVO_1380 ::::Y:::R:::E:::V::::::Y:::::::T:EVQ::S::E::K:V:S:::R:DD::E: Hbo0171 ::::Y:::::::D::::::::::Y:::::::DA:::D::::::K::K:::Q:::D::::: HQ2400A ::::::::::::::::V:::::::E::::D:H::::::::A::E::KQ::ET::::::TD consensus AVEAALAALRAAAEGDENVMPPIIDAVKAYATVGEICDVLRDVFGEYQPG--- #oth 2.233.322141.4113.22.3114...3.1111.11221.121..1412633 rrnAC0637 ::::K:D:::G::::::::::Y::::::V:::T::V::::::::::::::SSM Hmu0973 L:AER:D:::V:::::D:LL::M:R:::::::T:::::::::A:::::::GPA VNG0481 :::::::D:::::A:::::::Y:VA::::::S:::::NT:::::::H:::AAL NP1226A :::D::::::G::::::::::Y:V::::::::T:::::AM:::::::HG-::: hla2317 ::DD:::S::E::Q:S:::I:H::::::S:G::Q:VS::::EEY:::K::R:: HVO_1380 ::::::EDI::::N::::LL:L:VT::::::::::::G:::EE::::E::MA: Hbo0171 E:::::::IKDT:RS:A:L::::VE:::V:::::::SNA::::::::R:ST:: HQ2400A ::DSS:KSV:ET:R::G:I:::::::::T:::::::S::::EE::::RG-:::