|
Pairwise sequence scores | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
Consensus score | 1482 | hla0078 | HVO_0709 | Hbo0826 | pNG7325 | HQ1783A | rrnAC0710 | Hmu0933 | Hut0138 | NP0800A |
1113 | hla0078 | 1637 | 1024 | 1062 | 960 | 963 | 960 | 952 | 995 | 976 |
1107 | HVO_0709 | 1024 | 1823 | 1125 | 979 | 956 | 999 | 917 | 947 | 969 |
1185 | Hbo0826 | 1062 | 1125 | 1503 | 979 | 1004 | 1015 | 996 | 1003 | 1062 |
1130 | pNG7325 | 960 | 979 | 979 | 1469 | 1162 | 1077 | 992 | 943 | 982 |
1116 | HQ1783A | 963 | 956 | 1004 | 1162 | 1472 | 1054 | 963 | 959 | 945 |
1192 | rrnAC0710 | 960 | 999 | 1015 | 1077 | 1054 | 1866 | 1247 | 1048 | 1036 |
1186 | Hmu0933 | 952 | 917 | 996 | 992 | 963 | 1247 | 1643 | 1076 | 1071 |
1136 | Hut0138 | 995 | 947 | 1003 | 943 | 959 | 1048 | 1076 | 1563 | 1066 |
1205 | NP0800A | 976 | 969 | 1062 | 982 | 945 | 1036 | 1071 | 1066 | 1541 |
266 symbols consensus -----------------------APTILVIDNYDSFAYNLVQYVGEV------------- #oth 111221222222222332334545331.11......1........231111111114312 hla0078 :::MTGVGGDDDDAGWRPGAGDSDVRV::V:::::::::::::::::::::::::::::: HVO_0709 :::::::::::::::::::::::MTR:::V::::::::::::::::AVSEARGGDESADG Hbo0826 :::::::::::::::::::::::MTS:::V:::::::::::::::AF::::::::::::: pNG7325 :::::::::::::::::::::::--M::I:::::::::::::::::F::::::::::::: HQ1783A :::::::::::::::::::::::--M::::::::::::::::::::F::::::::::::: rrnAC0710 MSGHRGGDDSGNNTAGGPATDSL:::V::::::::::::::::::::V::::::::LR:: Hmu0933 ::::::::::::::::::::MTV::::::::::::::::::::::::V::::::::ER:: Hut0138 :::::::::::::::::::::MAE::V::V:::::::::::::::::V::::::::TTDA NP0800A :::::::::::::::MTGEDAESQ::V:::::::::V::::::::TH::::::::::::: consensus ------DDVLVRRNDAIDLAGIRALDPDGIVVSPGPGTPAEAGVSMPVFAELEYPTLGVC #oth 22323533.3.2...1224211452...11.1.......32..1.222.34132.21... hla0078 :::::AGA:A::::::V::::::::::::V:I:::::::::::::IDA::-:DR:VF::: HVO_0709 SSSDGS:::::Y::::LSTDDV:DI::::::::::::::::::::VS::RD:D::::::: Hbo0826 :::::A:E:V::::::V:T:D::S:::::::::::::::::::::V:::RD:S::::::: pNG7325 :::::::::T::::::::VE::HE:::::::::::::::::::::ID::::T:::A:::: HQ1783A :::::::E:T:Q:::::::DD:Y::::::::I:::::::Q:::I:ID::::::::V:::: rrnAC0710 :LGGTE:::V:::::::AVE:::EM::::::::::::::ED::::::I:E:::::::::: Hmu0933 :LGGGPE:::::::::VSI:::ER:::::::::::::::EA::::::I:SR:R::::::: Hut0138 WLPGVDGE::::::::V:::D::T::::A::::::::::QA::::::::ES:ST:A:::: NP0800A ::::::AN:V:::::E:SA:::GR:::::::::::::::TD::::::I:ES:S::::::: consensus LGHQALCAANGAPVGHAPAVVHGKPSLVTHDGTGVFAGLPDRFEVGRYHSLAVEREDLPD #oth ....1..113.24.31.13.....1.615...422133221223.......2.23532.4 hla0078 ::::::::SR:SR:R:::E:::::::TIA:::E:::::::::LR:::::::C:::::::: HVO_0709 ::::S::::L:SR:::::H:::::::::E:::A:::S:::::I:::::::::::H::V:P Hbo0826 :::::::::L:S::KR::E:::::::::S:::E:I:E::::::::::::::::::::I:G pNG7325 :::::::::H:T::::::S:::::::E:R::::RLYD:VD:P:::::::::::KASE::: HQ1783A :::::::::H::::::::::::::S:K:R:::SNLYDDIS:P:D:::::::::::Q:V:T rrnAC0710 :::::::::::::::::E::::::S:S:::::::::EDIS:P:::::::::::D::N::: Hmu0933 :::::::S::::E:E::ES:::::S:T::::::::::D:::P:::::::::::::TA::: Hut0138 :::::::::H::S:::::::::::S:AI::::R::::A::QE:P:::::::::::DA::: NP0800A ::::::::::::A:::::E:::::::VIN:::R:I::S:::::::::::::S::PGE::A consensus ELVETAAT---------------------DDERGVVMGVRHREKPHIGVQFHPESILTDA #oth 5.51..4.122221111232332332323511351....11331..2...........35 hla0078 ::::::R::::::::::::::::::::::E::SE::::::::::::::::::::::::PR HVO_0709 ::AV::Y:VAEGS::::EAENSDGDTGTEG::PA::::::::::::V::::::::::::S Hbo0826 ::::::W::::::::::::::::::::::::D:R::::::R:NR::V:::::::::::EN pNG7325 T:S:::H::::::::::::::::::::::N::Q:I::::Q:A:::::::::::::::::: HQ1783A P:I:::::::::::::::::::::::::::::Q::::::::PD:::H:::::::::::N: rrnAC0710 V:T:::Y:VSDDAEAAAVPESADAATADGT::SQ:::::::SDR:::::::::::::::H Hmu0933 V:E::::::::::::::VSGTDGDVRDDAAGD:RI::::::::R::V::::::::::::G Hut0138 C:E:::H::::::::::::::::::::::::::S::::::::S:::V::::::::::::N NP0800A S:::::R::::::::::::::::::::::::::::::::::::R:::::::::::::::: consensus GKQMIANFCAQCATD----------- #oth .132131.255354422111111111 hla0078 ::ALVR::VEV:EDG::::::::::: HVO_0709 ::DIVR::V:LAVG:GPAAAAWEGER Hbo0826 :::LV:::V:A:GG:DD::::::::: pNG7325 :::IVE:::TGI:KA::::::::::: HQ1783A :::L:K:::MSI:D-::::::::::: rrnAC0710 ::T::E:::LL:N:T::::::::::: Hmu0933 ::T::E:::L::N:T::::::::::: Hut0138 ::A:::A:LE:HVV-::::::::::: NP0800A :E::::A::S::K:::::::::::::