8 genomes BUD1110 8 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC3499 HVO_1599 Hbo3242 Hmu1040 Hut0454 hla1117 NP1664A HQ2633A

Pairwise sequence scores
Consensus score	362	hla1117	NP1664A	HQ2633A	rrnAC3499	Hmu1040	Hut0454	HVO_1599	Hbo3242
225	hla1117	769	174	154	178	133	176	171	137
217	NP1664A	174	374	145	162	189	180	167	174
222	HQ2633A	154	145	473	155	133	166	156	184
234	rrnAC3499	178	162	155	382	202	171	158	160
236	Hmu1040	133	189	133	202	377	209	165	167
198	Hut0454	176	180	166	171	209	357	188	186
230	HVO_1599	171	167	156	158	165	188	362	237
226	Hbo3242	137	174	184	160	167	186	237	374

103 symbols
consensus       --------------------------------------------------DDDLEDAVET
#oth            11111111111111111111111111111111111112222222222223252332.134
hla1117         MGRRVGSPPQLIFLILHNTHVEAINLPVRSRRDDDSKGYNPAAVEPVTMS:ETI:A:::H
NP1664A         ::::::::::::::::::::::::::::::::::::::::::::::::::MT:TD::I::
HQ2633A         :::::::::::::::::::::::::::::::::::::MMDMYMLMDTDSD:IE:AT::A:
rrnAC3499       ::::::::::::::::::::::::::::::::::::::::::::::::MS:HEMH::::A
Hmu1040         ::::::::::::::::::::::::::::::::::::::::::::::::::MS::::::DE
Hut0454         ::::::::::::::::::::::::::::::::::::::::::::::::::MS:I:A::DE
HVO_1599        :::::::::::::::::::::::::::::::::::::::::::::::::MS:::D:::AQ
Hbo3242         :::::::::::::::::::::::::::::::::::::::::::::::::MS:E:::::K:

consensus       FLAEADAAYDEYEQGYADADATLRVLEAHIDELRAAADE----
#oth            ..324233442.12..3.1.11.332341123.1314133111
hla1117         ::D:TESSL:S::::::::::::T::RT:::::A::V:DERSE
NP1664A         ::::SETVLE::D:::::::::::Q:RQ::ET::E:H:DA:::
HQ2633A         ::DDV:::::D:::::::P:V::S:IMS:VKA::E::::S:::
rrnAC3499       ::N:::D::G::::::T:::::::R::TA:E:::TSTE:::::
Hmu1040         :::A::DC:AD:DR::D::::A::R::::::D::T::::::::
Hut0454         ::D:Y:::RED:DR::T:::::::LI:S:VE:::D:VE-::::
HVO_1599        ::SDYNS:MK:::K::V::::::S:ID:::::::::RE-::::
Hbo3242         :::DV:::HK:::K::V::::::ELVMR:V:D::D:HES::::