8 genomes BUD1148 8 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC1667 HVO_0652 Hbo0875 Hmu0632 Hut0331 hla2729 NP5236A HQ1285A

Pairwise sequence scores
Consensus score	582	HQ1285A	rrnAC1667	Hbo0875	HVO_0652	hla2729	NP5236A	Hut0331	Hmu0632
280	HQ1285A	1022	189	264	252	255	206	183	225
312	rrnAC1667	189	603	232	205	251	281	247	261
382	Hbo0875	264	232	600	308	326	243	210	291
360	HVO_0652	252	205	308	637	329	239	221	257
399	hla2729	255	251	326	329	635	267	237	272
318	NP5236A	206	281	243	239	267	630	232	297
316	Hut0331	183	247	210	221	237	232	572	298
406	Hmu0632	225	261	291	257	272	297	298	595

139 symbols
consensus       ----------------------------------------------------AAHEAVLT
#oth            1111111111111111111111111111111111111111111111112244761434.4
HQ1285A         MNTDSGIDGDTAKSDHSGNIGKIEMSADSSHNTITDIHSSVTTDGETNSVSQKC:TLE::
rrnAC1667       ::::::::::::::::::::::::::::::::::::::::::::::::::MT:P:QTR::
Hbo0875         ::::::::::::::::::::::::::::::::::::::::::::::::::MDSR:DIT::
HVO_0652        ::::::::::::::::::::::::::::::::::::::::::::::::::VRP::S:S:E
hla2729         ::::::::::::::::::::::::::::::::::::::::::::::::VTADR:::T::S
NP5236A         ::::::::::::::::::::::::::::::::::::::::::::::::::::-M:T:E:V
Hut0331         ::::::::::::::::::::::::::::::::::::::::::::::::::::MEY::::D
Hmu0632         ::::::::::::::::::::::::::::::::::::::::::::::::::::VD:::::S

consensus       FEYDDERRARLVARSVRPEIGEIDDDRSTATLSRDGATVRVTIAAADLVALRAGINTWTR
#oth            24.52533.351361223.221.412.14141412142242412.2.11.....511.41
HQ1285A         WD:TSVQH:QV:RLA:EQ:V:::::A::C:QVENN:T::T:N::::::I:::::A:::::
rrnAC1667       A::SSAD:::AIEQ:I::::ND:EG::T::R:::::QR:EL:V::S::::::::::::LT
Hbo0875         :S:A::::::T::E:I:I:E:::A::::AV:VE::DQ::::RV:::::::::::V:::::
HVO_0652        :D:P::::::V:E:::AV:E:::::A::G:HVA:E:R::V::VE:D::::::::V:S:I:
hla2729         :R:PSQ::::::GDALE::V:::::A::A::V::::DA:::RV::D::::::::::S:S:
NP5236A         :::ETSE::THI:AAI:::V:D:QG::T::S::::D:RIT:D:E:D::::::::L:::ST
Hut0331         :A:::SDS:A:IEG::AQ::A::EG::TR:R:D:::D:LSI::::::P::::::MT:::T
Hmu0632         :::::DQQ::R::::::::::::GGE:T::::R::::::V:E:T::::::::::C:::AT

consensus       LVEVAERVAGGAS------
#oth            1222..2445546333332
HQ1285A         F:A:::QLFNS:DDLKIE:
rrnAC1667       :RG:::NALV:RK::::::
Hbo0875         F:A::::I:DR:A::::::
HVO_0652        :::T:::::SAG:ALSESA
hla2729         ::::::::GS:RGRQ::::
NP5236A         :L:A::::NESG:RCRSGT
Hut0331         :::::::AG:V--::::::
Hmu0632         ::A::::T::TVP::::::