| ||||||||||||||||||||||||||||||||||||||||
| Pairwise sequence scores | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Consensus score | 2890 | VNG1879 | VNG2395 | Hmu1934 | Hut1081 | rrnAC0147 | hla0594 | HVO_0022 | Hbo1475 |
| 1264 | VNG1879 | 2895 | 921 | 924 | 900 | 956 | 1016 | 1055 | 1050 |
| 1608 | VNG2395 | 921 | 2711 | 1450 | 1472 | 1356 | 1313 | 1344 | 1212 |
| 1931 | Hmu1934 | 924 | 1450 | 2971 | 1895 | 1492 | 1427 | 1521 | 1475 |
| 1898 | Hut1081 | 900 | 1472 | 1895 | 2969 | 1509 | 1395 | 1480 | 1487 |
| 2063 | rrnAC0147 | 956 | 1356 | 1492 | 1509 | 2881 | 1919 | 1765 | 1822 |
| 2005 | hla0594 | 1016 | 1313 | 1427 | 1395 | 1919 | 4425 | 1721 | 1566 |
| 2190 | HVO_0022 | 1055 | 1344 | 1521 | 1480 | 1765 | 1721 | 2892 | 1990 |
| 2060 | Hbo1475 | 1050 | 1212 | 1475 | 1487 | 1822 | 1566 | 1990 | 2984 |
602 symbols consensus ------------------------------------------------------------ #oth 111111111111111111111111111111111111111111111111111111111111 VNG1879 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: VNG2395 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu1934 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hut1081 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC0147 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: hla0594 VCSSAVTVTGPYDCSNTVLSDSSRSRQPSSIRSLVTLGSGTGPSRVPRQPASPATATAAP HVO_0022 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo1475 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: consensus ------------------------------------------------------------ #oth 111111111111111111111111111111111111111111111111111111111111 VNG1879 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: VNG2395 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu1934 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hut1081 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC0147 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: hla0594 PASRRRRVTLVSPLVVAALPLPSLGSSLIGVRRPRRGKSVSAALSRVIPPFRSRVESSFS HVO_0022 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo1475 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: consensus ------------------------------------------------------------ #oth 111111111111111111111111111111111111111111111111111111212222 VNG1879 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: VNG2395 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu1934 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hut1081 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC0147 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: hla0594 LRQSSRGRPLSATRILFVTTGCNNPVMTNDDATETDRRDAPDDRQADSGGGAGRRTDRRT HVO_0022 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo1475 ::::::::::::::::::::::::::::::::::::::::::::::::::::::MTKWDY consensus --MRRRSFLRAAGAG--GVAA-LAGCA-----GDGGDDT----------TDTAASDTTEG #oth 2234..411233.33433442121..4111111522542122222122245455554446 VNG1879 :MTS::R:VA:V:SATAASLG:::::V:::::::RETT:::::::::::ATEETTT:::: VNG2395 ::::::DY:::V:G:AT:::::-:::L:::::QM::NSA::::::::::----------- Hmu1934 ::::::N::TRT:::LASLT:::S::T::::::::::G:ESASTESATD:EVTE:A:DTE Hut1081 ::VK::T:::T::VSVL:TT:::S:::::::::ED:T::EQTTEPSSET:::VTA:G:PP rrnAC0147 :::D:::::T::::T::VSVS:F::::::::::L::S:E::::::::::SS:G::N:D:S hla0594 GVPT::R::ALG::A:::AV::::::SAEPTD:ED::GE::::::::::NG::GD:SAD: HVO_0022 :::::::::::::::::::S:L::::T::::::T::EQ::::::::::::TE:SG:A::T Hbo1475 SV:::::::T::::S:::::::::::V::::::N:DGTE::::::::::::SG:TE:ETA consensus T-TTTGTTTGTADEEPPTLTVGTYSSFVDAPSASPGNWLKEAFESEF-DATLEWQTPDNG #oth 362442433435535442.3111132122231312.4.1.44212231233332411321 VNG1879 :T::::G::A:QQGT::R:RM:ASETY:N:V:T:A:::V:D:VQ::Y:TVDFD:VVAE:: VNG2395 -:--------------E::R::::D:::GEG::--:R:::AQW:ADH:ET:V:FT::TA: Hmu1934 SV:DE::::::VE:LSG::S:A::::::GEDT:--:::::SE::::HP:V:V:FE::E:: Hut1081 :D:::TE::T:SSSSTD::::A:::::TGEDT:--:::::S:::A:YP:K:V:FT::E:: rrnAC0147 -::AS::S::S::GADE::V:::::A:::S::T:::A:V:QR::E:::::R:I::::S:E hla0594 PGSSD:DDGDGD:::T:::::A:::::I::::V:::E::::::::RV:::E:::A::::E HVO_0022 :A::E:::A:---G:SR:::::::G:::::::S:::P::::T::::::::::::::::S: Hbo1475 :E::::::::::A::::E:V::::::::::::T:::P::::T:::::::::IRYE::::E consensus VNQYIERASRGVDIDADLYVGLNTGELVRADEEL--DDALFATVDD--VSRADDVKEGLQ #oth 1131241445.1423..211.12263.2.2.331111551.5645421232623123415 VNG1879 :TEFMR::QQ:::LG::G:::VTAAD:A:::R::::SAP:::AF:TDA:DNT:N:HDRFW VNG2395 ::EFVNKKRN::G:::::F::::::::::I:N::GD:TR::DGLAAD::::SSEI::A:H Hmu1934 L::::Q:K:E:AP:::::F:::::::::::::Q::::E:::::AS:R:IEG::T::PE:: Hut1081 L::::L:QQE:AG:::::::::::S::::::Q:I:::GS::Q::Q:D:LA::GN::S::E rrnAC0147 ::H::::RNA::::E::M:L::::DH:::V::N:::::G:::D:G::::AGQ::I:S::: hla0594 ::Y:V::::S::S:::::::::T:ED:::V::T:::::D::VERGE:::EGF:::R:::L HVO_0022 ::Y::::GL:::ESG:::::::DAQM:::I:R:::::E:::SPAEG::L::I:::::::N Hbo1475 ::H:::::::::::A:::::::DVNM:I:I::N::::SPM:TS:::::L:NRG::::S:E consensus FDPDGRAVPYDTGYISLVYD----GTEVDAPETFDALLDDEYAGALIAQNPQSSATGRAF #oth 1.141.2212111.1211112221233342.2.121.1533131311211143121.31. VNG1879 I:GTD:ML:TGAS:VTII::::::E:V::::::LA::TT:::SDGILVP:::NT:::L:: VNG2395 I::A:::LT:::::::::::::::::V::G::::E::TTEP:::T:LT:TA:N:DP:::: Hmu1934 ::::::V:::::::::::::::::EG:::::G::::::EPA:ED::::::A:Q:DP:::: Hut1081 I::::::IT::::::::::N:::::N::QN:A:::::TS:Q:Q:D::V::A:Q:DP:::: rrnAC0147 :::::::I::::::::::F:::::::ATT::::::G::AE:H::D::T:::S:::::::: hla0594 :::FD::::F::::V:::::::::::AIE:::::EG:::::H:::::::::GA:T:::S: HVO_0022 :::Q::::::::::::::::ETYGDGDFV::::::G:::S::::::L::::T:::::Q:: Hbo1475 :::::::::::::::C::FNKLFGDS:FT::::::G::KEQ::DD:LV:::V:::::K:: consensus LLHTIDAK--GPDG------------YLDYWARLVDNDVRVLGDWEDAYNAYSGGEAPMV #oth 1.1114411113.11111111111111.11.55.31.1122133.442.5.2242.1... VNG1879 V:W:V::F:::E::::::::::::::F:E::R::A::GLQTA:S:NAT:S:::::::::: VNG2395 ::W::HEF:::::::::::::::::::::::T::::::::::NG:SES:T:FTE::R::: Hmu1934 ::W::YN:::D::::::::::::::::::::EG::::G:TI:S:::P::::::DE::::: Hut1081 ::W::AQ::::T::::::::::::::::E::QD::::::TI:S:::P::Q::MND::::: rrnAC0147 ::::VKQF:::::::::::::::::::::::SD:Q::::::::S:S:::S:W:::::::: hla0594 ::::VHRFGD::::SVEGGDGDPDYD::::::E:Q::::::::S:D:::A:W:::::::: HVO_0022 :::::::::::E:S::::::::::::::::::S:KE:::::::N:::T:::::N:::::: Hbo1475 :::S:K:::::R:S:::::::::::::::F:QK:KE:G::::K::GTS:D:::K:::::: consensus VSYSTDQVFAH-DEGVDLARHQIRFLNDQGYANPEGMALFADADNPELAREFMDFMLRPE #oth 1.....1.214143131243.122.11.11.21111215.22225121232.23.3.333 VNG1879 M:::::::Y:SQ:PD::M::::VA:PG:SA:TYVS:TTK:ES:T::A:VDT:AS:::SGD VNG2395 ::::::R:IYN::PD-::PH:RVG:::::::I:::AV:R:::T:T::V:A::VE:::SS: Hmu1934 :::::::::Y::G::::MS::::G::::::::::::::Q:::S:DA::::A:AS:A:TAP Hut1081 ::::::::YY::G::::IQK::VG:::::::::::A::::D:::A:::G::::::V:S:K rrnAC0147 ::::::::::D:QNDAN:EE::::::::::::::::::V:DG::T:D::::::G:L:::: hla0594 ::::::::::S:M::A::EK:::::::::A::::::::V:::::E::::::::S:::E:D HVO_0022 ::::::::::A:ES:E:M:::::::::::A::::::::P::::S::D::V:::::::::: Hbo1475 ::::::::Y:::ES:E:::K::L:::::::::::::::::EGT:Q:::::T::::::::: consensus AQAEIAVRNVQFPATETADLPEDFAEYAQEPPEPVTFSYDELRGNVSEWIEAWARQIASN #oth 4.431.21.122.11231211323321232.2111223112.432232.34312122233 VNG1879 T:RIV:EK::GI:TVTN:S::AELR::VHV:EA:ISH:AET::QHAD::RA:VT:::::Q VNG2395 R:QG::E::A::::::::S::A:V:::GY::::::RLT::::A:S:A::T:T::QR::T: Hmu1934 ::R:::T:::::::V:GV:PGG::G:::L::::::::T::::S::::G::DE:::::::: Hut1081 ::S:::::::::::V:GV:PG:E:SQ::Y:::::::::::::S:::EG:::D:::E:VN- rrnAC0147 I:G:::::::::::::S::::::Y::L::::::::::G::::K:S::G::SD:E::F::: hla0594 V:GV::E:::A::::D::E::D:Y::L::::S:::::T::::Q:S::::V:D:E::Y:G: HVO_0022 V::::::::::::::T::E::::::Q:::::::A::::::R:QN:L:D:TD::::EF::K Hbo1475 I::::::::::Y:::T::E:::S:GK:::A:::A:::N::T::D:L:D:TN::E::FIG: consensus -- #oth 11 VNG1879 :: VNG2395 VE Hmu1934 :: Hut1081 :: rrnAC0147 :: hla0594 :: HVO_0022 :: Hbo1475 ::