|
Pairwise sequence scores | ||||||||
---|---|---|---|---|---|---|---|---|
Consensus score | 4109 | Hmu1933 | Hut1082 | VNG2396 | rrnAC0146 | hla0595 | HVO_0021 | Hbo1476 |
2895 | Hmu1933 | 4076 | 2853 | 2362 | 2286 | 2292 | 2317 | 2378 |
2836 | Hut1082 | 2853 | 4341 | 2546 | 2213 | 2221 | 2212 | 2375 |
2912 | VNG2396 | 2362 | 2546 | 4470 | 2419 | 2358 | 2334 | 2422 |
3240 | rrnAC0146 | 2286 | 2213 | 2419 | 4366 | 3298 | 2607 | 2734 |
3236 | hla0595 | 2292 | 2221 | 2358 | 3298 | 4385 | 2677 | 2734 |
2973 | HVO_0021 | 2317 | 2212 | 2334 | 2607 | 2677 | 4139 | 2803 |
3051 | Hbo1476 | 2378 | 2375 | 2422 | 2734 | 2734 | 2803 | 4120 |
635 symbols consensus ----------MRRRALRRRVDRRA----LPAGAVVTLAVLLVVFYYPVGTVFADAVLVDG #oth 122211222343444545533.3122112333313.3331423.....12.133125222 Hmu1933 ::::::::::-----MDA::::L:::::::V:T:A:::T::::::::::S:LVG::R:G: Hut1082 ::::::::::----MRWPSA::L:::::V:::L::::SIIT::::::::R:LL::IDPG: VNG2396 :::::::::::::QSGVSV:::Y:::::V::AG:A:::::A::::::::::::A:LGP:N rrnAC0146 MTETASSPSSK:G:TV:NTIE:::::::IVGL::G:IGL::GI:::::A:::I:S::::: hla0595 :VSDASRGADGS::T::EQIT::LRGRL:T:L::::SV::VAA::::::::LIE::V::: HVO_0021 :::::::::VS:AS:SV:::A:ALEQRL:TLV:AL:AV::::L:::::A::::::::A:: Hbo1476 :::::::::::NVT::A:WTE::::::::GVV:A::A:I:I:L:::::A:::V:::Y:SE consensus RLTLAPIVAVLTDPFYFG-----FA------------------------------V--P- #oth 5324523342.311.151332332132343222221111111111111111334423423 Hmu1933 Q:S:::LK:::G::::A-:::::--::::::::::::::::::::::::::::::-::-: Hut1082 S:-FG::RTI::::::V:VAHHA::DPLGVPAGILAW::::::::::::::LDNG:PLSA VNG2396 -----:V:::::SE::M:AAHGV::HPLSVPGDVAAWAHATDVRVGWSGWLPAIT:VH:G rrnAC0146 :W:GRVF:SI:Q::::::EPARLL:GEQVGA::::::::::::::::::::VIES:LS:D hla0595 VP:::IF:EL:R::::::EFARL::GESPIA::::::::::::::::::::VARDLLG:D HVO_0021 :::VE::A::::SE::L-:::::--::::::::::::::::::::::::::::::-::-: Hbo1476 AW::T:L:D:::S::FQ-:::::--::::::::::::::::::::::::::::::-::-: consensus --LGLFGFTAYQAALSTVASVALGLPGAYLLARFEFPGRRTLRSLTILPFVLPSIMVAVG #oth 3331322...1..41.12..211...1.1111.1..1..11...1..1...1...1.21. Hmu1933 ::-D:::::::::L:::::::LV:::::::::::::::::F:::V::::::::::::::: Hut1082 IEF::::::::::G::AL::I::::::::V:::Y:::::E:::::::V:::::::L:::: VNG2396 VS:::V:::::::V:::::::::::::::V:::::::::::::::::::::::::::V:: rrnAC0146 RR::VI::::::::::::::::::::A::::::Y:::::::::::::::::::::::G:: hla0595 RR::IV:::::::::::I::::::::A::::::::::::::::::::V:::::::::::: HVO_0021 ::VDIIW:::K::FY::L::L:::::A:W:F:::::R::E:::::::::::M::::::I: Hbo1476 ::-:R:R::::::L::::::::::::::WV:S:::::::E:::::::::::M::::::I: consensus FVATFGRNGTLNDVLAALGLGPVELLFTLEAIVVAHAFYNAPLVTRVVTAAWESVDASAV #oth .2.1..22.12.33.331.223.51211.21122.........11.21211..21..231 Hmu1933 :L:M:::T:LF::L::VV:::::::T::::I::L::::::::::::L::::::::::RR: Hut1082 :Q:M::HT:L:::F::T::FER:KF::::PIVI:::::::::::::L:S:T::GI::QQI VNG2396 ::::::QH::V::A:::::V:R:QF:Y::QIV::::::::::::::M:AS:::T:::::: rrnAC0146 ::::::::::::A::G:::::Q:N:::::::V:I::::::::::A::T:::::::::::: hla0595 ::::::::::::G::G::::P::D:M:::::::I::::::::::A::T:::::::::::: HVO_0021 ::::::::::::RA:SLV::P:::::::::::::::::::::::A::::::::::::RT: Hbo1476 ::::::Q::::::::T::::PK:T::YS:P::L::::::::::I:::T:::::::::::: consensus ETARSLGASPLRAFRDVVAPQLLPAVLTGAALTFIFTFMSFPIVLALGGLQLATVEVFLY #oth .1..21..2.41..1...2..12.1223213.1.2.1.31.........2211.1..221 Hmu1933 ::::T::::::V:::::::::::::L::A:V:::L:::::::::::::::EF:::::W:F Hut1082 :S::AM::::::::::::::::::S:::AGL:A:::S:::::::::::::E:Q::::W:: VNG2396 ::::::::::::::::::V:::V::IAAS:L:::V:::::::::::::::K::::::W:: rrnAC0146 ::::::::::F:::::::::::Y:S::M::::::V:::ST:::::::::F::::::::V: hla0595 ::::::::G:T:::F::::::VY:::::::::::V:::GT:::::::::FE:::::::V: HVO_0021 ::::::::N:R:::::::L:::::SIGV::T:::::::A::::::::::F::::I:::V: Hbo1476 ::::T:::::Y:::F:::V:::::::AV::T:::::::A::::::::::T:::::::LI: consensus ARVRDLAYAEAAALAVVETVISLGLLYAYLRYEARQTVAGRGARPLPRRSLLPGARSLRE #oth 2311313221..2.142.122.121322...1.14353222242133.332223342342 Hmu1933 :::::::LT:::T:GAI::AL::::I:V:::F::M:LR::G:S:SID:VP::A:W:::TD Hut1082 :K:QS::LG::::::::::::::::M:L::::::E:I::RGDGTSQS::P::A:::T:AD VNG2396 ::IQQFD:GT:::::TL::GL::A:M:V:::::G::SA:SA:G:SR::KR::-::SGG:: rrnAC0146 RLI:::E::::::::LI:LG::::::::::::::KH::RS::I::::::Q:R:PSL:V:: hla0595 RL::::N::::::::I::L:::::V:L::::::::N::SS::V::::::::V:A:PT::: HVO_0021 S:::::::::::S::::::AV:IT:TAV::::::S:RS::GA:N::::Q:V::ADWTPKS Hbo1476 SG:QN:DF::::S:::::::L::::T::::::::SRESS::::::QR:::I::SSL:VS: consensus LLRRLALAGYAVVALVVFVAPIASMVLASVTGPEGGLTLANYRFLIARQATGATFQVQPL #oth 423122344.1312231.12.21.1221.22113152.12313..331.211133213.3 Hmu1933 -P:::::LC:GG:V::L::G:L::L:VE:::T:::Q::TDY:A::L:Q::SA::GT:::V Hut1082 -P:::FVF::GLL:A:::LG:VV:LI:E:I:::S:EF:::Y:E::L:Q::SA:IGT:K:: VNG2396 WAL:::GV:::::VA::::::VV:::A:::-:GVTDP::RWW:::GT:::S:R:---::A rrnAC0146 ::P::G::V::::::A:::::::::::::LS::::-::::::Q:::D::T:::S:::::W hla0595 V:P:IG::A:::::GL::::::::::::::::GD:A:::DH:::::D::Q:::A:::R:W HVO_0021 T::TVGIG:::L:VGL:::V:V::::::::::GD::::::::A::AE::::::S:::K:: Hbo1476 :ATT:::VI:GI:T:I:::::::::L::::::::::F::DH:::::E::Q::::Y::L:: consensus PAIRNSLLFGAGALALALPMGVVVAVLTTRRGRGRRLADALLMAPLAVSGIVVGLGLLRG #oth 2.141.13.1412121.1....1122221.33..223211222..31...111.1.1.12 Hmu1933 :::T:::::A::::V:::::::::S:VAA:ET::S:V:E:::T:::::::::L:::M::T Hut1082 :::Q::::::V:T:L::V::::::SIVA::E:::G:A:E:::S::I::::::::::::QS VNG2396 T:VWY:IV::V::::V::::::::GAFSA:G:::::::::A::::V::::V:::F:::QS rrnAC0146 D:V:::::::IAS::V::::::::::::::DY:::K:V::VA:::::::::::::::::: hla0595 :::::::T:ASA:TL::::::::::::::::F:::K:V::VA:::::::::I:::::::: HVO_0021 :::L:::G:A::T:VV:V::::TM:::::::Y:::G:I:V:S:::F:::::::::::::: Hbo1476 T::::::V::L:T::::::::::MS:::::DF:::KII:::S::::T::::::::::::: consensus LVFGVEVAGTRLAVTGALAIVAAHAVAGYPFVTRTVAPALAGLDDRLVESARALGASRAR #oth .1..1223.2.3322.221112...111....2.1.1.31332.521211..2...2.31 Hmu1933 ::::T:LF:H::T:::PV::::::::::::::::::T:::SAI:::::DA::S:::::TT Hut1082 :::::A:L:H::T:::PV:V:::::::A::::S:::T::::S:::::G:A::S:::::V: VNG2396 :A:::DI::::VQLV:P:VV:C:::I::::::V:N:::M::AV:S:V:::::::::::G: rrnAC0146 :::::::G::::::G:GF::I:::::::::::V:::::G:E:I:H:::::::::::P::: hla0595 ::::::I::W:F:A:::V:::V:::I::::::V:::::G:E:::RS:I:::::::::::: HVO_0021 :::::D:L:::IR:::::::::::::GA::::::N:::LF:R::G:::::::S:::T:T: Hbo1476 :::::::F:::VQ:::::::::::::GA::::::N:::L:G:::PQ::::::T:::::V: consensus ALLDVELPLVWPGVVAGAAFAFAISIGEFDSTVILAEGADSYTMPVALERFIGRRL---- #oth 1.3111...222112......1.......22.12.1314432...1.22.1212.22112 Hmu1933 :::::::::TAAAL:::::::V::::::::T::L::::V::A::::::::YT:N:SLGPN Hut1082 :::S:T:::IV:ALL::::::::::::::::::L:S::GG::::::::::Y::N:SLGPS VNG2396 ::W:::::::::::::::::::::::::::::::::NES-V:::::::K::LID:TAGPS rrnAC0146 ::::I:::::::A:I::::::::::::::SA:IV::S:TNQF:::I:I:::::::::::: hla0595 V:R::::::::::::::::::::::::::TA::V::T:::A::::::I:::::::::::: HVO_0021 ::V:I::::::T:::::::::V::::::::::I::::::G:::::::V:::L:::::::: Hbo1476 ::::I:::::AA::::::::::::::::::::::::::SA:::::::VQ:YL:::::::: consensus -GPATAMGTVLLVVTSASFVVIDRVGGRTGG---- #oth 2...1...21..3..33..1111.2..23533111 Hmu1933 L:::::::::::A::TV:::::::::::WER:::: Hut1082 L:::::::::::T::AI:::::::::::YD::::: VNG2396 T:::A::::::::::A::::::::::::YQP:::: rrnAC0146 ::::::::V::::::::::LL:::L::DEV:F::: hla0595 ::::::::V::::::GL:::::E:L::E:R:L::: HVO_0021 ::::::::CL::L::::::L:V::F:::W:EL::: Hbo1476 ::::::::C:::L:::L:::::E:F::::::RGGF