|
Pairwise sequence scores | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Consensus score | 2856 | hla2574 | rrnB0200 | NP2542A | rrnAC0149 | VNG2217 | Hbo1576 | HVO_2958 | hla0385 | NP0560A | rrnAC2957 | Hmu3187 |
1668 | hla2574 | 2987 | 1246 | 1607 | 1503 | 1421 | 1486 | 1512 | 1514 | 1415 | 1390 | 1448 |
1718 | rrnB0200 | 1246 | 2921 | 1364 | 1364 | 1542 | 1521 | 1595 | 1598 | 1593 | 1631 | 1611 |
1800 | NP2542A | 1607 | 1364 | 2951 | 1578 | 1563 | 1560 | 1573 | 1560 | 1603 | 1565 | 1537 |
1894 | rrnAC0149 | 1503 | 1364 | 1578 | 2877 | 1618 | 1621 | 1691 | 1685 | 1556 | 1723 | 1691 |
2153 | VNG2217 | 1421 | 1542 | 1563 | 1618 | 3246 | 1985 | 2041 | 2002 | 1867 | 1980 | 1963 |
2233 | Hbo1576 | 1486 | 1521 | 1560 | 1621 | 1985 | 2778 | 2208 | 2117 | 1903 | 1943 | 1886 |
2279 | HVO_2958 | 1512 | 1595 | 1573 | 1691 | 2041 | 2208 | 2853 | 2260 | 2001 | 2002 | 1958 |
2370 | hla0385 | 1514 | 1598 | 1560 | 1685 | 2002 | 2117 | 2260 | 2841 | 1974 | 1938 | 1997 |
2221 | NP0560A | 1415 | 1593 | 1603 | 1556 | 1867 | 1903 | 2001 | 1974 | 2893 | 2079 | 1997 |
2281 | rrnAC2957 | 1390 | 1631 | 1565 | 1723 | 1980 | 1943 | 2002 | 1938 | 2079 | 2861 | 2288 |
2312 | Hmu3187 | 1448 | 1611 | 1537 | 1691 | 1963 | 1886 | 1958 | 1997 | 1997 | 2288 | 2873 |
428 symbols consensus -------------------------------------------------LSVLQRAPDDR #oth 111111111111111111111111111111111111112333234245576467334626 hla2574 :::::::::::::::::::::::::::::::::::::::MGENDVDDTGSATDPL:DE:C rrnB0200 ::::::::::::::::::::::::::::::::::::::MNMKNEAGSTD:PAPV:EDS:L NP2542A ::::::::::::::::::::::::::::::::::::::::::::MDTADAIDAFAEGENL rrnAC0149 :::::::::::::::::::::::::::::::::::::::::::::::MTQD::N:::::: VNG2217 MALVLPNQSTETGQWVEIRWQRSPWKRLLRKSYSRRGRSSAHVRTGVPVTETIH:::::T Hbo1576 :::::::::::::::::::::::::::::::::::::::::::::::::----------M HVO_2958 :::::::::::::::::::::::::::::::::::::::::::::::::V:::::D:Q:: hla0385 :::::::::::::::::::::::::::::::::::::::::::::::::V::FD::Y::P NP0560A :::::::::::::::::::::::::::::::::::::::::::::::::M:T:::D:R:: rrnAC2957 :::::::::::::::::::::::::::::::::::::::::::::::::M:::::D:T:: Hmu3187 ::::::::::::::::::::::::::::::::::::::::::::::VVP::::H:D:T:Q consensus VRVLDEDGEVVDDATVPDLSDEELVEMYRDMRLARHFDERAVSLQRQGRMGTYPPLSGQE #oth 413.123.43244362.113.2412321132332.1..3.11.1.....21.12122... hla2574 Y:::GP::IPLP::::::::::RFRAI:::LVTT:R:::::::::::::I:::A:CA::: rrnB0200 :Q:::AE:N:LPQ:S:::I::RQ:L:::ETIK::::::Q::I:F:::::LA::A:MT::: NP2542A H:R::A::QPLV:GYE:P:::DR:R:LH::::::::::::M::::::::I:::A::A::: rrnAC0149 IQA::A:::I::PDLI::::::A::S::::::F::R::::MI:::::::L:::SS:A::: VNG2217 Y:::::N::L::G:E::::T:D:::::::Y:K:::R:::::::::::::I:::::::::: Hbo1576 L::::::::P:GE--::::::D:::R:::E:WM:::::T::::::::::::::::::::: HVO_2958 ::::::::T::GE--:::ID::T::::::Y::::::::T::::::::::::::::::::: hla0385 ::::::G::::G:--::::D::A:::::::::::::::G::::::::::::::::::::: NP0560A :Q::::::Q::AEDG:::ID::T:L::::T::::::::::::::::::::::F::M:::: rrnAC2957 :QI:::::T:::G::::::::D:::::::YLK:G::::Q::::::::::::::::M:::: Hmu3187 :Q::::N:::R:G::::::A:::::AI::E:K::::::Q::::::::::::::::MA::: consensus GAQVGSAHALDDDDWIFPSYREHGAALVRGLPLKQTLLYWMGHEAGNAIPEDVNVFPLAV #oth 11121136..324.24212....2.6442143154434112.314.35434342322421 hla2574 :SA:::T:::A:R:L:SYQ::::::IV::D:-:SEY:P::L:::S:TEAIA:G:::::NI rrnB0200 :S::ATSL::AEQ::L::T::::A:KYAH:MD:VSLFEPLR:YRD:Y:::D::::M:EYI NP2542A A::F::MY:::::::VSYQ::::::VID::-G:ADYIR::::Y:S:::TLVEH:IA::NI rrnAC0149 :S::::TY::A:E:T::YQ::::::LVA::::W-EYV:::::::::::ALG:::::::NI VNG2217 :::IA::M::A:::::V::::::::S::::::::D:::::::D:R:::::AEE:I:TV:: Hbo1576 :::I:::F:::EE::M:::::::::::H::::::R:::::::::K::R::::A:I::V:: HVO_2958 :::I:::I:::EQ::MV::::::::S:L::::::::::::::::K::EM::G::L::P:: hla0385 :::I:::T:::E:::MV:::::::::::::::::::::::::::::::T::G:::::V:: NP0560A A::::::L:::A:::V:::::::A::Y:::ID:D:::Q::::D:R:SQTAA-A::::V:: rrnAC2957 AS:::::F::R:G::A:::::::L:MY:K:W::SDD::::::S:S::SP::::QA:SF:: Hmu3187 ::::A:::::S:G::V:::::::A:LHAH:W::D:I::::::S:::SDP:DG:AA:T::: consensus PIATQIPHATGAAWAAKLRGEDR-AVLCYFGDGATSEGDFHEGLNFAGVFDTPAVFFCNN #oth 2.221211.2.32.1422223451154211.1.1........13.1...122.22.2.1. hla2574 G::AHL:::V:::::FDY:E::::V:AAH::G::::::::::AM:::::::::TL:C:H: rrnB0200 :::::V:Q:M:M::GH::Q:KTET::::HL:::::::::::::::::::::V::::V::: NP2542A S::AHV:::V:M::::::::D:::::V:H::::::::::::::A:I:::::V::::V::: rrnAC0149 S:GAHL:::V:WS::::K::DE:::GVVH:::::::::::::AM::::::E::T:::::: VNG2217 :::S:::::::MG::SQ:KD:SDT:FM::::::::::::::::::::::Y:::N:::::: Hbo1576 ::S::::::::::::K::Q:::S::::::::::G::::::::::::::::N::NI::::: HVO_2958 :::S:::::::::::K::::::DT::I::::::::::::::::::::::::::N:::::: hla0385 :::S:V:::::::::S:::::ND::F:::::::::::::::::V:::::::::T:::::: NP0560A :::::VL::::V::::D:K:D:I:VS:::::::::::::::::::::::::L:::::::: rrnAC2957 :::::::::::::::S::K:D:T::A:V:::::::::::::::::::::::V:::::::: Hmu3187 ::::::::::::S:::::::Q:E:VH:A:::::::::::::::::::::::::T:::::: consensus NQWAISVPRERQTASATLAQKAEAYGFDGVQVDGMDPLAVYQVTREAVEKAR-------D #oth .1....1.222.1113.2.2..9...12.12...1....2.41252.431.312133223 hla2574 :G::::I:ES:::::D:F:E::G::::E:IR::::::::S:A::K::ADR:::::RNED: rrnB0200 :::::::::::::::E:I:E::Q:::I:::R:::L::::::K:AS::LA::::::::::N NP2542A ::::::::QAA::::D:F:A:::::::P::R::::::::T:E:MD::LDR:K:SDDERPT rrnAC0149 :::::::::::::::Q::::::D::::::::::::::::T:S::EA:R:R:V:::::::G VNG2217 ::::::::::Q:::TD::::::A::::E:::::::::::::::AHD:I:::K:::::::: Hbo1576 :::::::::::::::::I::::K::::E:::::::::::::AA::A::K::K:::::::: HVO_2958 :::::::::::::::E::::::T:::I::::::::::::::S::KA:LD::K:::::::N hla0385 :::::::::::::R::::::::::::I::::::::::::::S::KA:::::::::::::: NP0560A ::::::::::Q:S:::::::::H::::E::L::::::::::K:::::::::HAADPSRD: rrnAC2957 ::::::::::::S::E::::::N:::::::::::::::::::::::::D::H:::::::: Hmu3187 ::::::::::::::::::::::S::::E:I::::::::::::::S::::::::::::::: consensus PAGDEPRPTLIEAVQYRFGAHTTADDPSVYRDDDEVERWKRKDPIPRLEAFLRDTGLLDD #oth 3554371.321.221............21..3331116.143..21.3.51.234231.1 hla2574 SPV:A:::A:::FLE::::::::::::TA:::P:A:DP:RAL::LD:M:::::E::RI:: rrnB0200 :GPG:R::::::S:::::::::::::::::::ES:E:A:RDR::VD:I:KY:YNE:I::S NP2542A D::TAS::S:V:::::::::::::::::A::T:EA::::R:W::L::F:G:::EF::::: rrnAC0149 AN:G:QE:IF:::::::::::::::::D:::::A:::E:RER::LD:M:::::NCN:::: VNG2217 :DE::M:::::::::::::::::::::::::EES:::A::D::::::::T::VE:DR::: Hbo1576 ::E::R:::::::::::::::::::::T::::S::::Q::Q::::::::T::::::R::: HVO_2958 :GEG:G:::::::::::::::::::::T:::::E:::K::A::::::::::::E::RI:: hla0385 :ET:R::::::::I:::::::::::::T:::::::::S:::::::::::RY::SE:V::: NP0560A AP:RAC:::::::I::::::::::::::::::::::::::Q::::::::L::::R::::: rrnAC2957 :PAG:L:::M:::::::::::::::::::::::S::::::Q::::::M::::::R::::: Hmu3187 :::ED::::M:::::::::::::::::::::S:E:::::R:::::::M::::::R::::: consensus ERVAAIEESVEDEVADAIEAAESTERPDPDEMFAHVYAEMPPELEAQREYLEALRERHGD #oth 35233235425541221125.1353114.63214211214143245.4331543233211 hla2574 DG::::H:EADEI:::::DF:::V:-:::AD::D:A::DL::::RR::DE:L:AVDE::E rrnB0200 DLESE:QD:I:Q::SE:::T::Q::-AS::NIVE:::EDV:AR::E::DE:NR:::KYD: NP2542A :A:S:V:SD::AT::::VDQ:MAV:-::::DL::DA:::L:DDIKS::A::QR:::EY:: rrnAC0149 GKIDVMDDTIDERLGEI:DN:::HA-:::TDL:TD::D:STSNIDE::::F:G::::::: VNG2217 AAIES::ADI::A:::::::::E:P::::AS::EN::::::QR::Q:L::FQSI:DEY:: Hbo1576 :K:D::QSE::::::E::K:::AEP::E:N:::TN:F:::T::VQ::A:AFAE:Y:E::: HVO_2958 :G:E::::D:KGR::::::::::DP::::S:::N:A:::RT::IQ::Y:EF:::::KF:: hla0385 ::::E::TA::TR::E:::::::EV::K:Q:::E:A:::L:::::R:Y:EFA:F::A::: NP0560A :::::::Q::T::::::V:::::::::A::S::DN:::DR::::D::QRQ:DR::N:Y:: rrnAC2957 :::D::D:::Q::::T::DE::A::::K:E::::D::::::QR::Q:LD:::E::A:::: Hmu3187 :S:E:::S:IA::::::::T:::Y:::A:E:::::::::::QR:RD:LD::::::::::: consensus EALLEE-- #oth 33131431 hla2574 G:FQR:E: rrnB0200 G:FS:VLE NP2542A K::R::H: rrnAC0149 D::::SE: VNG2217 :::::D:: Hbo1576 :GF:R::: HVO_2958 :GF:R::: hla0385 ::F::::: NP0560A :E:::-:: rrnAC2957 :V:::-:: Hmu3187 :V:::-::