|
Pairwise sequence scores | |||||||||
---|---|---|---|---|---|---|---|---|---|
Consensus score | 3750 | rrnB0198 | rrnAC2955 | Hmu3185 | HVO_2960 | Hbo1574 | NP0556A | VNG2219 | hla0383 |
2245 | rrnB0198 | 4009 | 1731 | 1627 | 2046 | 2082 | 2012 | 1922 | 1858 |
2705 | rrnAC2955 | 1731 | 3971 | 2442 | 2121 | 2118 | 2145 | 1999 | 1901 |
2421 | Hmu3185 | 1627 | 2442 | 3976 | 1920 | 1800 | 1989 | 1869 | 1915 |
2782 | HVO_2960 | 2046 | 2121 | 1920 | 3839 | 2723 | 2256 | 2136 | 2135 |
2761 | Hbo1574 | 2082 | 2118 | 1800 | 2723 | 3721 | 2261 | 2154 | 2095 |
2731 | NP0556A | 2012 | 2145 | 1989 | 2256 | 2261 | 3821 | 2130 | 2142 |
2572 | VNG2219 | 1922 | 1999 | 1869 | 2136 | 2154 | 2130 | 3526 | 2297 |
2513 | hla0383 | 1858 | 1901 | 1915 | 2135 | 2095 | 2142 | 2297 | 4004 |
616 symbols consensus -------------------------------MAREFELPDVGEGVAEGELVTWHVEPGDT #oth 1111111111111111111111111111112344..3...1...11.1.212.2.41.13 rrnB0198 MPPCRSIHWRITTCHRRSVSKTASAKQSISN:V:::::::::::::::::LR:R:::::A rrnAC2955 :::::::::::::::::::::::::::::::-MF::N:::L::::::::VL::R:S:::A Hmu3185 :::::::::::::::::::::::::::::::-MF::::::L::::::::ILA:::::::R HVO_2960 ::::::::::::::::::::::::::::::MALK::K::::::::::::::::::A:::E Hbo1574 ::::::::::::::::::::::::::::::MAIE::K::::::::::::::::::T:::: NP0556A :::::::::::::::::::::::::::::::::H::::::::::LT:A:I:R:L::::E: VNG2219 ::::::::::::::::::::::::::::::::::::T::::::::::::::R:L:DE::: hla0383 ::::::::::::::::::::::::::::::MPVK::K::::::::::::::::L:A:::R consensus VTEDQPVAEVETDKALVDVPSPVDGTVQELHAEEGEMVPVGDVIITFAV--DGE-DDAAA #oth .2...11........3.1..1122.1.4..3312.12.31.3131214222222343242 rrnB0198 :S:::::::::::::V:::::::::V:E::R:A::::::::::::V:R::::::::GPK: rrnAC2955 :::::VL::::::::A:::::::::V:::::::V::::QT:E:L::I:EEG:A:TA:::: Hmu3185 :E:::VL::::::::A:::::::A:V:R:::Y:P:D::ET:A:VVSI:-::---:T:E:D HVO_2960 :::::VL:::::::::::::::F::::K::L:::::V:::::::::IQE::::D::EE:: Hbo1574 :E:::V::::::::::::::::YN:::K::L::::::::::::::::E:::E::G:EEV: NP0556A :::::::::::::::V:E::A::N:::A::R:::::::S::T:::::D:::::D:S::TD VNG2219 :::::::::::::::Q:E::A::::::::::WA::DV:::::LFV::D:::::::AS:T: hla0383 :E:::::::::::::::E:::RY::::E::FV:::DI::::::::S:R:GE:::DVE:GG consensus DETDE---------EADEAASEAAET--------DE-ADAEPSTADG-RVFAPPSVRRLA #oth 423231111111115325334543322211232333635543544411111.2.12.2.. rrnB0198 T::AP:::::::::AD:TT:GSGQQ:EVGATAQPA:ETQS::AITQRVQ:P::::::::: rrnAC2955 SD:::AESAGADTE:::S::::::AA::::::::::QSG:ST::::::::::S::::::: Hmu3185 ::::D::::::::::T::E:ATT:V:::::::::::S::S:::ATG::::::::N::::: HVO_2960 EAA:A:::::::::D:EA:G::S::G:::::::::DG:SDDE:GSG:::::::::::::: Hbo1574 A:AEP::::::::::T::VSE:::::::::::::--:--G:TE:SS::::::S::::Q:: NP0556A ::GEP:::::::::-::K:TTDE:A::::::EDD:STT::A:TG::::::::A::T:::: VNG2219 :DG:::::::::::SG:::::ATS:A::::::::--:--------S:::T:::::::T:: hla0383 :DSA::::::::::TGAD:TEPEP::DIGAETDAESD:ET::D:PP:::T:::::A:::: consensus RELGVDIAAVDGSGPSGRITEGDVRAAAEDADD-AAAADDGPRSV---------D--GDD #oth ..1..1132.311111..1113..112234443144343443553454311113122425 rrnB0198 :::::::SS:AD:-S::::::P::::Y:SPESS:TQER-------:::::::::-::SSQ rrnAC2955 ::K::::::::::::G::V:::::E::TAS::E::T:S::S:T::VSKA::::S:D:::S Hmu3185 :::::E:T:::::::::::::S:::::G:::AS::DD:EVESAVSRVDD::::G::::SG HVO_2960 ::::::LD::::::::::V:::::::::D:DG::EDDEPS:::T::::::::::-::QTN Hbo1574 ::::::::S:S:T:::::V::S:::E:::SD:E:S::S:::::E:SFS::::::-::::: NP0556A :::::::::::::::G::V::A::::::DAT:TVESG:::A:P:GDDAD::::T:DTD:: VNG2219 ::::::LDS:E:::::::::D::::::::GGE::TTEP-------:::::::::-::ATE hla0383 ::::::::V::::::G:::G:A::::H::GGG::H:G::A:DSGSDKAPAPTPT:VGSS: consensus AKSAVRRVDEGDSAAGS---SAAPS---AAQEAADRERTLAAPATRKLARELGVDIDAVP #oth 53213531243453543111544444334461413.1311.2.1..43.513111113.. rrnB0198 QTT:AEQRTQQAAP:Q::::VSPAQT::--R:VV:::T:V:V:K::HI:A:E:I:L:T:: rrnAC2955 PTA::SQ::A::TDD:TAVK::VK:VSGDG::::S:DQ:::T:::::A::::D:N::::: Hmu3185 V::::::::D::E:DDE:::PVVN:AVA:VDSD:E:D:S::T:::::::SD::::::::: HVO_2960 G:::TAKR:::T::SA:::::S::T:::---:S::::Q::::::::A::K:E:::::::: Hbo1574 :V:KSGD:GN:EVTT:A:::-----::::SV:::G::K::::::::RV:E:K::::NN:: NP0556A VR::::::::EADDG:::::D:T:DEKPT:A:::::D::::::::::::D:S:::L:::: VNG2219 :T::TE::::D:T::SA:::-----:::GS::P:G::K::::::::GV::::::::ND:: hla0383 R::::HKRGDDG::ES::::AD:::A:AG:P:S:G::T:::T:::::V:::::::::D:: consensus TDEQRDGEAFVTAEAVQAYAEAQQAAQAADAAAVAAEAGAG--AA-A-----------E- #oth 13131..111.2412.231.2234322432341345344246332334322122211134 rrnB0198 ::::K:::P:::L::::E::::::Q::QT:RD::VER:A:D::--:-:::::::::::-: rrnAC2955 ::QT:::QPY:DEA::RT:::::::::::::E::S::G::AGT::E:GGAGAETT:::AV Hmu3185 :::S::::PY:DEA::R:F:ASADETERER::GSTGR::EPST:DG:SG::::::::::A HVO_2960 AT:M:::::::SP::::E::Q::RE::::::E::S:::D::TAT:E:TVDAASEPAPP:A Hbo1574 AS:::::Q:::S::::HE:::::::::::::Q:L:E:E:::EAE:AEAA::::::::::T NP0556A :::T::::::::P:Q::Q:::::TE:::::T::::DTTADTA:--:-:::::::::::-: VNG2219 AV:::::::::::::::::::GG::::GEAGG:ATR:FV::::--:-:::::::::::-: hla0383 :::T::::::::G:I:R:::::LESGASPA:D::DTS:PEPKS:DAS:::::::::::LS consensus APGAGERREPYRGVRRTIGEQMARSKYTAPHVTHHDEVDVTGLVEARERLKPRAEERDVR #oth 333522413..2.1.22..42.32.1112..11.1.312134..23124.433..12133 rrnB0198 E:ARP:S:K::K:I:Q:::AA:TS::::::::::Q::::::A::D::ST:RRE::AQ:I: rrnAC2955 ET:D::::::::::::S::::::::RREV::A::::Q:V:S:::::::::A:L::::::T Hmu3185 :SAE:Q:::::Q:::::::QR::E:RREI::A::::RAV:A:::D:H:::E:L::::G:D HVO_2960 G:::::-:V::K:::KA::D::Q::::::::::::::::::E:::L::Q:::V::::GS: Hbo1574 G:V:::-:V:::::::A::D::E::::::::::::::::::E:::L::E:::L:::Q:T: NP0556A ----:DE:I::::I::::::R::E::R:V::A:::::::::R:::I:D::SD:::A::TK VNG2219 ----::TT:::::I:::::::::E::::::::::::TAVIDS:::T:SK::A:::AE::K hla0383 :::SADETI::::::::::K::E:::::::::S:::TAE:D:::A:::E::R::::QG:K consensus LTYMPFVMKAVVAALKEHPVLNSQLDEENEEIVLRDDYNIGVAAATDAGLMVPVVEDVDR #oth ...1.112.122.1.323.52.33.1222...12234212.1.2...3..2....331.4 rrnB0198 ::::::::::CA:::Q:N:QV:VS:::A:::::EKQY::::::T:::D::L:::::N::A rrnAC2955 :::T:::V:C:A:::DK:::::TA::T::::::Y::AH:::::::::H::V::::N:::G Hmu3185 :::T:LLL:C:A:::R:::I:::E::A:A::::YH:RVDL:::::::H::V:::::R::E HVO_2960 ::::::::::::::::GF:Y::::::::::::::::E:::::::::::::L::::H:A:: Hbo1574 :::::::::::I:::::F:FM:::::::::::::::E::::::T:::V:::::::D:A:G NP0556A :::::::L:::::G:Q::::::A::::DA::::::S:::V:::T:::::::::::D:::: VNG2219 :::::::::::::::::F:::::E:R:DD:::A:KQ:::::::V::::::::::::H::Q hla0383 ::::::::::I::G:::Y:S:::E:R:DD:::::KG:::L:I:V::::::::::::N::E consensus KGLLELAREMNDLVEKARERKIAPEEMQGGTFTITNFGAIGGEYATPIINYPETAILGLG #oth .112221512111242..2.213121.3....111.2.21....12....3.13...12. rrnB0198 :::::V:S:T:EKTQ:::::SLS::::R::::::S:I:G:::::G:::::Q::S:::A:: rrnAC2955 :::V:::G:V::::GR::::D:ERS::::::::V::::V::::::S::::V:::::::I: Hmu3185 ::::AI:::V::::AR::D:DL:R:::::::::V:::::::::::D::::A:Q:::::T: HVO_2960 ::M::::D:::EK:::::N::::::::R::::::::V:G::::::::::::::V:::A:: Hbo1574 ::::D:S:D::EK:::::::::::::::::::::::I:G::::::::::::::V:::A:: NP0556A ::::AI:D::R:::S:::::S::::::::::::V:::::V:::::::::::::A:::::: VNG2219 :SM::IST:::::::Q::::S:::AD:D:::::::::::::::::::::::::::::::: hla0383 :::F:::E:VR::ASR:::::LT:A::K::::S::::::::::::::::::::::::::: consensus AIKERPRVVDG---------------------EVVARPTLPLSLSIDHRVIDGADAARFT #oth 11221.11212211111111111111111222212126211...11...12...31.3.2 rrnB0198 E::KK::::EAD:::::::::::::::::GEETIEP:HIMT::::F::::L::::::Q:: rrnAC2955 :L::::VAE:::::::::::::::::::::::::::K:::::::A::::::::::::::V Hmu3185 :L::::VAE::ETRAQRGSPNGERGAQRPASG:::::A::::::A::::::::::::::V HVO_2960 ::::K::::::::::::::::::::::::::::::P:NV:T::::F::::V:::QG:::: Hbo1574 ::::K:::::::::::::::::::::::::::DI:P:KV:T::::F:::IV:::VG:::: NP0556A E::RK:::::D::::::::::::::::::::::I:P:DV:T:::::::::::::E::S:V VNG2219 ::D:::VAE:::::::::::::::::::::::D:R:AQ::::::::::::::::E::Q:: hla0383 ::E:::V:R:::::::::::::::::::::::::::A:::::::::::::::::V::E:A consensus NTVKEYLEDPELLLLE #oth .32322.53.51.111 rrnB0198 :SIQK::QN:N::::: rrnAC2955 ::L::::S::TR:::: Hmu3185 ::L::::AE:S::::: HVO_2960 :R:::L::::K::V:: Hbo1574 :K:::::MN:K::::: NP0556A :::SA::::::::::: VNG2219 :R:M:::T:::::::: hla0383 :::M:H::H:L:::TQ