| |||||||||||||||||||||||||||||||
| Pairwise sequence scores | ||||||||
|---|---|---|---|---|---|---|---|---|
| Consensus score | 3163 | HVO_B0052 | Hbo1617 | NP1104A | VNG1564 | Hmu2001 | rrnAC3013 | hla2073 |
| 1952 | HVO_B0052 | 3168 | 2046 | 1190 | 1418 | 1421 | 1443 | 1432 |
| 1702 | Hbo1617 | 2046 | 3125 | 1222 | 1235 | 1342 | 1371 | 1313 |
| 1861 | NP1104A | 1190 | 1222 | 3147 | 1572 | 1504 | 1552 | 1456 |
| 2039 | VNG1564 | 1418 | 1235 | 1572 | 3166 | 1556 | 1667 | 1607 |
| 2287 | Hmu2001 | 1421 | 1342 | 1504 | 1556 | 3256 | 1763 | 1901 |
| 2262 | rrnAC3013 | 1443 | 1371 | 1552 | 1667 | 1763 | 3302 | 1997 |
| 2291 | hla2073 | 1432 | 1313 | 1456 | 1607 | 1901 | 1997 | 3318 |
451 symbols consensus ----------MSSRP---AATAALGDVDPARSRHAGRRSAVALTGDLVVVGTADGDVVAF #oth 11111111111235442134234..134123..1312..2.233323211.222.414.1 HVO_B0052 :::::::::::P:A:L::S:RRD::E::::S:::NWT:::::A:D:A:F::::A:R:::L Hbo1617 :::::::::::AAF-:::TNRTE:::LEA:A:::NWA:::::AAAGR:F:::N::Q:S:: NP1104A :::::::::::::DLTL:S:::::::I::CG::Q:::::G:T:D::GP:::R:::T:A:: VNG1564 :::::::::::::P::::TSS:P:::IE::G::QL::::S:CW:::G::A:LP::T:::: Hmu2001 ::::::::::::E::K::PRSVG::EPS:::::::::::::::::E:::::::T:::I:: rrnAC3013 :::::::::::::QR::::P::D::::A::::::Q::::::T::SG:A::::::::LQ:: hla2073 MSDAVDDPHPNPN:DGFD:R:V:::::Q:G::::::::::::VV:::A:A:::::AL::: consensus DHAA-----LDERWR-------ADGDGSVVALAAFDDGVVAGERGARGRIRCLDAETGDR #oth 2523122213422.443211114225421.23133313212...1321421232333.53 HVO_B0052 EA::DSASDS:D::E::::::::R::NP::SM::A::FL:V::::GD:LV:V:::::::A Hbo1617 :S:L:::::DS:L:S::::::::::AT:::SM::T::CL:V::::EDSSL:V::P:::E: NP1104A T:D-:::::GT:::T:::::::V::T::A:T:VSTG:::LV:::SE::::Q:RS-RN:K: VNG1564 :G:-:::::::::::NA:::::G:DR:::::::P:AG:::::::::A:E::LH:G:::AV Hmu2001 :::T::::::T:Q::ADR::::EGA:AA:::::::G:A:L:::::PD::V::YE:A::R: rrnAC3013 :VS:DAGP::HR::QYG:::::T::EP::::AVP::G:::T:::S:::E:::H:-AG::L hla2073 :RDT::::::V::::TAPAGVD::APP:::SI:TYQG:IL::::S:::GV::::PTD:TV consensus RWRYATADDIGEPQRETRFFLPFVVDIATD--GDRAYVAARRYER----DGDD-RSFRSV #oth .132312212.3123111.12.2.11312321221231.1.....22111.231.414.2 HVO_B0052 ::T:::T::V:TAA:DSL::R:Y:::L:VT:::::VV:::::::::::::::E::VW::: Hbo1617 ::E:::T::::TATK:SL::Y:Y:::V:VT::D::VIA::::::::::::::E::VWS:: NP1104A ::QHDA:::V:G:TKD::::::M:::A:VGS:DGTCF::::::::R:::N:G-::G:E:S VNG1564 ::::RA:G:::R::ED::::::::::V::QAG::::F::V:::::GA:::::-::A:Q:A Hmu2001 ::QH:::AE:::::::::::::::A::V::::E:::::::::::::::::::R::::::: rrnAC3013 ::::E:RG:L::A:Q::::L::::ASL::::::::C:A:::::::RTDD::N:L:H:E:: hla2073 :F:ME:R::V:G:::::::::::::::VG::::E:::::::::::::::::::::::H:: consensus VYAFARDGTRAWRYRADASPIALAA--EGDRVAVAYNRCPGDHQHGLVVLDAETGDRRWT #oth .3113311343.222321.11212311232111..2111.23325.111..234.45345 HVO_B0052 :LG:G:::RV:::R:VH:::::V:::::::::::::::::NPE:N:::L:::H::G:VAS Hbo1617 :LG:D:::AVQ::::VG::::::TV:::NG::::::::::KPD:D::::::S::::TLT: NP1104A :::::::::LR:::D::::::GV:PLD:::G::::::::::G:DS::::::-DN:SE::: VNG1564 ::::EG:N:P:::F:S::::VS:::::D:::::::FVNG:::QAA:VL::::A::TQ:RR Hmu2001 :S:::D::::R:QFE::::::S:DR::RD::L:::::::::S::R::::::::H:TSH:Q rrnAC3013 ::::GA::SID:T::T:G:::S:D:::DKN::::::::::::::::::::::DD::P::M hla2073 :F:LDAH:A:::T:ET:::V:::D:::RD::LG::H::::::D::::::::::S:R::FD consensus WDPGTDGDRRVGDVALAADGAVVASHGDYRGYRLDDDGRVRWRVDLATPTDVGDETVYAY #oth ...33221..1....2342332131.1.11..2.142.612.332.12335322311.1. HVO_B0052 :::::::::::::::F:G:ALA::::::K:::L::FE:NE:::I:::SERR::::::::: Hbo1617 :::D::E::::::::F:DGDIA:CC:::K:::L::S::HEQ:GF::::KQ:IDG:::::: NP1104A :::KPGA::::::::V:DGSV::T::A:::::::T-::S:E:A:::GR:QSD:G--::T: VNG1564 :::TGG::::::::::TPR:V:A:::A:::::C::G::-:Q:V:::GR:VER:EQ::::: Hmu2001 :::DS::Q::::::::VE:::L:::::::C::::::G:T::::AE:::R:T:::::L::: rrnAC3013 :::::::Q::::::::L::::::S:::::::::::SG::E::::P:::::::AGD::::: hla2073 :::::E:Q::I:::::V:::::::::::K:::::T:G:G:::::::::::V:D:::L::: consensus PNHVHAADDGAVFVTGNTYPEDGRETDARHPDEHTAFGVSPDGGRR-WTADVGGFAREAA #oth .1..21233421.1....11222.11.21.13.1..2113411422114232....3233 HVO_B0052 :T::CV:GET:A::::::FA:ST:DP::::::::::V:::V:::E:L::R:T:::::A:V Hbo1617 ::::CV::GV::::::::FA:ST:DP:::::::::::A:--EN:EQL::HSN:::::A:R NP1104A ::::::TAS::::L::::F:QE:::::E::EN:Q::::YT:::K::::Q:A:::::H:VG VNG1564 ::::::TG:S:::::::::::::::::::::T::::V::GR:::VA:F::::::::H:I: Hmu2001 ::::A:GNGAS::::::::AV:R:::::L::A::::::YG:::Q::::S:::::::G:I: rrnAC3013 ::::::T:E::::::::::::::::::::::N::::A:::L::N::::D:P:::::SGLG hla2073 ::::::::::V::::::::::::::::G::::::::V::::::D::::H:::::::S:L: consensus AAGSRVAVPGAQHFRDRDADRHGLRVFDAADGPVATRDTDGIVTAVAVDGGRVAAVEEPV #oth 32152341.3..1..312134.122222242.21434422.11..1.231333111.... HVO_B0052 ::::::F::S:::::E:E:::::VHT:G:TA:H:R:D:LP::P::::AG::VL:V::::: Hbo1617 SSDG:AII:S::N::R:S:ET::VHT:::EE:H:E:DSIA::P:::::GDDVL:V::::: NP1104A TD:E:ML::T::::::C:PTV::WTL::V::::::AAS:::V:::A::::E:G:V::::: VNG1564 :D:A:::::V:::::E::PA:::V::Y:I:A:R:DAWR:P:V:::A::::RT:::::::: Hmu2001 V:DHH:V::::::::T::::C:::::LS:R:::::S:E::::::::::::D::V:::::: rrnAC3013 TD::LL::::::N:::::::D:A::L::VV:::LD:L::::V:::A::SD:TAV:::::: hla2073 :::D::V:::::::::::::D:::::L:V:::::GD:A:::::::::TAD:D:::I:::: consensus VYHDEGTERGAYRLHTRRAP----------- #oth 2..111431.211.25544422222211111 HVO_B0052 E:::::VT::::::R::PIR::::::::::: Hbo1617 E:::::VTH::::::::P:TR:::::::::: NP1104A R::VDE:L::E:S:RMLS--::::::::::: VNG1564 ::::D:ER::TH:::AGHV-::::::::::: Hmu2001 ::::D:::::::::LVD:::RSQSARSSQGR rrnAC3013 ::::::H::::::::RIET:VADAST::::: hla2073 ::::::I::::::::WV:VG:::::::::::