|
Pairwise sequence scores | ||||||||
---|---|---|---|---|---|---|---|---|
Consensus score | 2152 | NP3184A | hla1002 | HVO_2612 | Hbo2235 | VNG1851 | rrnAC0249 | Hmu1095 |
1246 | NP3184A | 2171 | 904 | 1005 | 1014 | 886 | 1026 | 945 |
1304 | hla1002 | 904 | 2945 | 1015 | 985 | 1008 | 897 | 1066 |
1525 | HVO_2612 | 1005 | 1015 | 2287 | 1372 | 1099 | 1077 | 1094 |
1508 | Hbo2235 | 1014 | 985 | 1372 | 2166 | 1057 | 1026 | 1083 |
1386 | VNG1851 | 886 | 1008 | 1099 | 1057 | 2215 | 1025 | 1134 |
1408 | rrnAC0249 | 1026 | 897 | 1077 | 1026 | 1025 | 2559 | 1231 |
1458 | Hmu1095 | 945 | 1066 | 1094 | 1083 | 1134 | 1231 | 2159 |
403 symbols consensus ------------------------------------------------------------ #oth 111111111111111111111111112222222222222222222222222222222222 NP3184A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: hla1002 MSGRDGDGPGTDGDDRRSDGWEEELAEWDEEVSEWEAGEGDDERDEALDGDSDTDDPVDD HVO_2612 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo2235 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: VNG1851 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC0249 ::::::::::::::::::::::::::MLVRQLIGRTLSGTVTMCAGPFRSVLNMLHRPQW Hmu1095 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: consensus -----------MMRVVCAGHVNWDVTLRVDALPEPDGEARIEDRSQSGGGSAANVAVGLA #oth 22222222222331.22...2...1112..41.31.1.2314225411....1.1.22.2 NP3184A :::::::::::-::::::::L:::IR::::R::A::S:G::K::TE:::::::::::::S hla1002 DPDLEPESASHVPK::S:::I:::::IH::E:::::::T::DLLE::::::::::::::V HVO_2612 ::::::::::::S::I:::::::::::::::::::::::TV:S:VGA:::::::::S::V Hbo2235 ::::::::::::P:::::::::::::::::SI::L::::TV:S::TA:::::S::::::S VNG1851 ::::::::::::S:::A::::::::::::::::::::::E:VSQRR::::::::::CA:: rrnAC0249 ETAMIAPLPAVD:::I:::::::::::H::H::K::::G::T:::::S::::S:A::A:: Hmu1095 ::::::::::::A::L:::::::::::Q::R::G:::::Q:V:QC:::::::S::::L:: consensus GLDVDAALLGSVGDDEHGALARRELAAAGVD--HVLVVDDEETTVKYLVVDEAGEVMVLG #oth 211544522....3.12.63.421.4231.235412333242.22..331156.1131.2 NP3184A S:GCAP:M:::::::DR:NS::GR:ER:D:R:QY:RT:E:A:::A::VFT:DD:::AM:E hla1002 ::GGQSVVY::::G::S::::L::::S::::PGQ:::DA::P:S:::AI::GS::LLM:A HVO_2612 ::::P:::::::::::::HA:VA:::SK:::CR::VS::GGP:::::I:::A::::F::: Hbo2235 D:GL:VS:::::::::::RA::A::V:E:::CD::VTT:EL:::T::I::QPT::::::: VNG1851 :F:I::G:V:::::::::L::Q:::Q:::::LAGLR:::GL::S::::L::SR::::::: rrnAC0249 :::A:PLV:::::R:D::TM:::::::T::E::TL:IES::A:A::::I:::N:D:A::: Hmu1095 ::::ETT::::::A::::W::A:::DR:::E::T:::EA:DA:A::::::::G::::::: consensus NDGANEAFEAADLPPDTL-ADADHLHLTSQRPATAAALARRAAEADVPVSFDPGRRLGDR #oth 22.1..114141.255311332121...1.4.4..24.143.5331321.......233. NP3184A SG::::::::D:::SKA::V:::M::::G:D:Q:::E::E::VDH::L::::::::VDS: hla1002 ::::::S:T::E:DR:::::A:::::::G:Q:G::::::TA:G::GTTR:::::::V::: HVO_2612 SP:V::::::T:::T:P:::A:::::::::S:E:::T:::::H:E:TT::::::::V::: Hbo2235 CP::::::D:::::ESV::Q::::::::::::E::KQ::D:::SVG::::::::::I::: VNG1851 :::::::VAPG::D:AVVG::CE:V:::::::::::R:TAL:R:H:AT:::::::::R:: rrnAC0249 ::::::::N:S:::AE::::E:::::::G:N:T:::T:::D::A:::::::::::::PY: Hmu1095 ::::::::T:D::E:G:::DTT:R:::::::::::V::::::T::GC::::::::::DE: consensus DYEDALAATDILFLNDREA-------------DAAADS----ALDLAVRTVVVKHGPDGA #oth 213531342141.2.32..1111111111111243324333335554343223.1.54.. NP3184A ::STT:RR::L::V:R::::::::::::::::A-----:::::V:I::PWRIT:L:G::: hla1002 EF:A::H:::V::V:AP:::::::::::::::::L:::TDIDPWEPDD:V:AI:L:EE:: HVO_2612 G:A:::REV:FV:::::::ATALGEAAVQRGR:::::PVSDV:EA::QT:L:L::::R:: Hbo2235 G::VMISDV:Y:::::::::::::::::::::AL:L:-:::::F::DGQ:L:L::::::: VNG1851 ::G::::R:::::V::N:::::::::::::::G:VL:DDGGPTAPDSD:V::::::SE:: rrnAC0249 ::SSV:SHAE:::C:::::::::::::::::::H:R::::::G:FET:P:::::::DC:: Hmu1095 :::PV:::V:LV:::Q:::::::::::::::::I::EA::::G:LSG:DR::::::AG:: consensus EVRTPDG-RVSHPGFPIDAV-DTTGAGDAFAAGFLAARL------------DGTDPERAL #oth 2224243142311.12113.1..2.......1.12224411111111111143514121. NP3184A VCAG:E:AEI:::::D:ET:R::::::::::::::::WF::::::::::::ED::::::: hla1002 T::::H::D::::::D:::::::V:::::::::::G:A:RDPEIAGNGFSH:PR:YQVP: HVO_2612 :::DG:D::HV:::Y::::::::::::::::S::I::::::::::::::::::ATY:::: Hbo2235 :::R::::::A:::Y:::::::::::::::::::I:S:V::::::::::::A:D:F:::: VNG1851 T:H::S::S:T::::AV:P:::::::::::::::V:VV:::::::::::::::G:H:::: rrnAC0249 TAHIG:Q:T:TNA:Y::ES::::A:::::::::Y:L:SA::::::::::::QE::::::: Hmu1095 ::::DGE:TI:::::AV:P::::::::::::::::::SQ::::::::::::S:S:-:Y:: consensus AVANACGALAARTPGARTALSWRRVEALLDEQP---------- #oth 311..1..22144511146231433532434334322211111 NP3184A S::::A:::::G:R:VDID:::D:IND:RKD::R::::::::: hla1002 L:G:::::I::E:VT::AE:::D::RSMMG:S:ESDLLIEIRA HVO_2612 :::::::::T:AE:::::Q:::::LDD:IEG--:::::::::: Hbo2235 ::::::::FIS:V::::EG:::NEI::F:G:--:::::::::: VNG1851 EFG::::::::QHE:::::PTRADAASF::S:F:::::::::: rrnAC0249 :::::::::::QSS::::T:D:ES:WE:V:SGQPPETA::::: Hmu1095 ::G::::::::::T:::LHAE::D::::::IG:GE::::::::