| |||||||||||||||||||||||||||||||
| Pairwise sequence scores | ||||||||
|---|---|---|---|---|---|---|---|---|
| Consensus score | 6504 | hla2352 | Hbo0398 | HVO_1160 | NP4022A | Hut0515 | rrnAC1250 | Hmu1720 |
| 4662 | hla2352 | 9563 | 4090 | 4134 | 3831 | 3812 | 3947 | 3957 |
| 5042 | Hbo0398 | 4090 | 8646 | 5169 | 3988 | 4102 | 4226 | 4165 |
| 5119 | HVO_1160 | 4134 | 5169 | 8471 | 4083 | 4156 | 4274 | 4182 |
| 4640 | NP4022A | 3831 | 3988 | 4083 | 6400 | 3900 | 4022 | 3944 |
| 4931 | Hut0515 | 3812 | 4102 | 4156 | 3900 | 6456 | 4597 | 4625 |
| 5129 | rrnAC1250 | 3947 | 4226 | 4274 | 4022 | 4597 | 6298 | 5108 |
| 5045 | Hmu1720 | 3957 | 4165 | 4182 | 3944 | 4625 | 5108 | 6201 |
1327 symbols consensus MATDDA---------DGGDGGAASD------------------------AA-P-GDSNGD #oth 122114221111121323344443432321111111111111111111134535345655 hla2352 :T:E::ERSPV::SS:ETA:SP:::HRAS::::::::::::::::::::GPP:SDP:VS: Hbo0398 :::::GASSPVRQDS::D:E::LEGEVDGDRVALEGNVAPGGATAEGGD:DT:N::AS:G HVO_1160 :::::::::::::::::::QQ:L:GDVTS::::::::::::::::::::P:ESDAAPKQA NP4022A ::V:EG:::::::::E:D:::::::::AG::::::::::::::::::::P:A:EA:D::T Hut0515 ::I::K::::::::::::::SLR:R:::::::::::::::::::::::::TSLF:::DDE rrnAC1250 ::I::T:::::::::G::ESEQVNS::::::::::::::::::::::::--:-::GNLT: Hmu1720 -V:E:-:::::::::----------::::::::::::::::::::::::--:-:------ consensus QPARVGE---YTWADFRREFHDDGA----------------------------------- #oth 4315114111.3.42111141322322211223222332322232223221111111111 hla2352 R:VS::R::::S:RS:L:DRGR:D:ATELYADISEEPVVPATAVDAHFEDSVDRVIRAAG Hbo0398 PTVA::A:::::::H:LD::GE::DVTSLYRGHDPRETRERPGSSRWDDA:::::::::: HVO_1160 SN::::S:::::::::LD:YGS::DVESLY:GSDPRTQRDAPGTSRWEDD:::::::::: NP4022A :S:T::T::::D:D::::::::---::::::::::::::::::::::::::::::::::: Hut0515 :::EAE:EDA:N:V::::::::G::::::::::::::::::::::::::::::::::::: rrnAC1250 E:V::::::::::D:L:::V::G:R::::::::::::::::::::::::::::::::::: Hmu1720 P::I:::::::::E:L::DH:SG:R::::::::::::::::::::::::::::::::::: consensus ------------------------------------------------------------ #oth 111111111111111111111111111111111111111111111111111111111111 hla2352 VDETYTADGDTAVSGHGTPEAGTVVIGTDHVVLSGAAVVPAGTSTAAVAPDPVESVDETV Hbo0398 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HVO_1160 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP4022A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hut0515 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC1250 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu1720 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: consensus ------------------------------------------------------------ #oth 111111111111111111111111111111111111111111111111111111111111 hla2352 EGDEDDVETDRGEEDGEADDGEGDDEDGSDEDGSDETAEAADESAESDRADSDDPDARPG Hbo0398 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HVO_1160 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP4022A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hut0515 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC1250 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu1720 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: consensus ------------------------------------FDRS--EYLGFDPVETAARLEDAA #oth 111111111111111123322222221123213213312311321233153445434422 hla2352 ISIDGAGVSGVVVVPAEDVEPVPRRTPTDEEWSRVDI:P::::F:::::S::GY:VGA:: Hbo0398 ::::::::::::::::DEDEPTTPTRPTRDDWQNVSL:PTDEQ:::HH::::EDEI:T:: HVO_1160 ::::::::::::::::DGSAST::::PTRADWDRVGL:PE:::::DCH::DV::FVG:RG NP4022A ::::::::::::::::::::::::::::::::::::----::------------------ Hut0515 :::::::::::::::::::::::::::::::::::::::::::::::::HR:::V:RER: rrnAC1250 ::::::::::::::::::::::::::::::::::::::::::V::::E:R:LSQ:::::: Hmu1720 ::::::::::::::::::::::::::::::::::::::::::Q::::::NDIESV:T::: consensus SAAKTLNAPFEAFCDPETTPVAKGVYTWEHFKREYYYEDDGSRPRDE--DGEIIPF---- #oth 262342465342352243211412424122223122223224413141122144111111 hla2352 AVGDV:WDLCS:RYNLYEV::L::Y:::DDYRD::FLDEE:NP:TE:NEE::EE:LEFTH Hbo0398 :E::RIQSA::E:::::::::V:D:WM:::Y:::D::::::::::::::::::DR::::: HVO_1160 AH::N::EQ::::::::::::V:::WL:::Y::::::::::A::::S::AS::V:::::: NP4022A --------------------------------------------S:A:::A---:::::: Hut0515 :D:E:::THWQ::A:::::::R::E:Y:::::::::::S:::V:H:D::A::K::::::: rrnAC1250 ::G:::Q::::EYL::T::::::DI:::::::Q:::::-:::L:::S:::::V::::::: Hmu1720 :N::::KQ::D:YV::AA::::::::::::::Q:::::E:STP:T:G:::::K::::::: consensus -DAEEALGFDPDEIENALSAAGGAAEELAELVDERTVDVNPELDEDAFFSTVDGHTTVAN #oth 124332.1.113442342231553.3313332221..2.1113..11..1253.31.221 hla2352 D:KV::::::::RT:EL:G:G::::AD:::::::::::::::I::::::::EE::::L:: Hbo0398 ::::A::::::SV:::::ARGSHR:D::DDVIE::::N::E:::::::::DSH:A::A:: HVO_1160 ::G:A:::::::H::::VAR::QR:::::AV::::::::D::F:::::::S:::T::L:: NP4022A :SP:SY:::::RDADGR:GV:HI:::TV::AANR:::R:D:DV::AE::T:DG:AA::TT Hut0515 :EESDH:::E:::LAGRM:HGQNL::::VD::::::::::E:::::::::::E:N:::V: rrnAC1250 :::S:Y:H::SEHT::K::::EDI:S::H:Y:::N:::::::::::E::::R::::::V: Hmu1720 ::PA:Y:::E:E:V:SE::::D::::L:DN::EQ:::::::::::::::::Q::::::V: consensus RYDLEKAVPMEKKTHFREVERYWVNKPYAFVIIFHSRKENEKKYYVVEPHLNRIEDDLRE #oth .....1...33..3..3.21.....1.111.12.1.5....2...211.2323..31.41 hla2352 ::::::::::P:::::::I:::::::::::::V:R:T::::V:::AIQ::RTE::T::V: Hbo0398 :::::::::::::::::::::::::::HS::V::::D::::::::::::YQ::::R::A: HVO_1160 ::::::::::::::::::::::::::::::::::::V:::::::::::::::::::::T: NP4022A :::::::::D:::Q:::::D:::::E::::::::::E::::::::L:::::SP::::::: Hut0515 :::::R:::::::R::E::::::::::::C:VL:::K::::R::::I::A::D::RE:KG rrnAC1250 :::::::::QS::S::N:L::::::::::C::::::::::::::::I::Y:TD::I:::: Hmu1720 :::::::::LK:::::T:I::::::::::C:::::::::::::::::::YH:E:::::KG consensus FLTGKLKTAIKYSEDDSIVQGGEADRARVIEREAEQLLDRYDLY-DGPDGSGAADGLLDD #oth ..31..1.1...3212232323234.35..241244..4...1.3433444443523434 hla2352 ::::::R:S:::A-:E::AG:D:EF:EG::VD:TLT::::::::ERTD:DR:VV:D:V:: Hbo0398 ::::::R:::::N-:E:TIGT:DGT:R::::QQSLE::E:::::DP::::YSD:LS:AP: HVO_1160 :::N::R:::::G-:::V:E::RDN:G::::A:TYE::S:::::::P:ASAS::A:DDGS NP4022A ::A::::::::::S:ETV:H:::DV::S:::S:THA::::::::A::ARPDENG:::VAT Hut0515 ::GN::::::::A:EGVG:ED::::::A::::::QD::K:::I::EDAIE:::GT:ST:W rrnAC1250 ::S:::::::::::::V::::TD::::Q::Q:::::::S::::::::SVS:RGEESV:GQ Hmu1720 ::SN::::::::::::V::::S:::::D::Q:::::::N::::::S::V::-:EP:V::Q consensus LKELF-----------GLDTRAQ-GG------G--------------------------- #oth 4424422322222332.2352323224334442322323333223212211222222222 hla2352 :VDR:::::::::::::F:LTEGIA:RISESL:::::::::::::::::::::::::::: Hbo0398 PT:PT::EEPEPGAVA::F::LGL::EDAATD:GKASRDGSLGTFARRLGLSEESFGGRL HVO_1160 TADAAADADGAAESS:::AS:LGL::LFDGGN:SSADGSTTAATSGRFVGLGSRLGLNSV NP4022A :SS:VDTDDGEAGLFD:::I:::F:FGDADDEDASDRGEANGGDNA:::::::::::::: Hut0515 ::::V::::::::::::M::ETD:--::::::-::::::::::::::::::::::::::: rrnAC1250 V::::::::::::::::::EET::--::::::-::::::::::::::::::::::::::: Hmu1720 F::FL::::::::::::MEVE:::--::::::-::::::::::::::::::::::::::: consensus -------ADEAERTGALDGIAARPEPAVLEDDAETLTEYQVEKLLYMLKRDFIGYERIDG #oth 2111345433326523232121...1.1211.433.231.11..1.4.1..11..31..1 hla2352 ::::YEPPT:P:SES:PAK:L::::::::AE:S:::SKH:::::::F::::::::::::P Hbo0398 G:::SLF::PPRDDPG:::::::::::::A::DA::::::::::::V:R::::::::::: HVO_1160 FGGRART:::D:PL:GI::::::::S:::A:::DV:ND:::R::Q:Y:R::::::::::: NP4022A ::::SPDT:D:::GSS:RAVS:::::::V:E::::::SH:I::::::::::::::::::: Hut0515 ::::::AIEP::ESS::A:::::::::II:E:PD::::::::::::L::::Y:::GK::P rrnAC1250 :::::::---S:T::Q:S::ST:::::I::::EPK:N:::::::::::::::V::A:::: Hmu1720 :::::::---:VG::Q::::S:::::::::::P:Q:S:::::::::V::::::::QK::P consensus IKHDINVEDISCDGYNSPVFVYHSDYEQIISNVEHGEDELDDFVVKLAQRSGKGISKRRP #oth 1.1......1.......1.....1....1.1.12.1342..1................2. hla2352 ::Y:::::::::::::::::::::::::::T::Y::T::::::::::::::::::::::: Hbo0398 :::::::::::::::::::::::::::::::::V:A:T:::::::::::::::::::::: HVO_1160 ::::::::::::::::::::::::::::::::IY:::G:::::::::::::::::::::: NP4022A ::::::::::::::::::::::::::::V:T::Y:::::::E::::::::::::::::S: Hut0515 :::::::::V:::::::R:::::T:::::::::::::SD:::::::::::::::::::Q: rrnAC1250 V::::::::::::::::R:::::T::::::::::::KG::::::::::::::::::::Q: Hmu1720 V::::::::::::::::R:::::T::::::::::::RES:::::::::::::::::::Q: consensus QVDATLPDGSRAQLTLGREVSDHGTNYTIRQFKDVPFTPIDLINWNTFSLDEMAFLWLCI #oth ...........1....................111....1..1..2....11......2. hla2352 ::::::::::::::::::::::::::::::::NEI::::::::::K::::::::::::S: Hbo0398 ::::::::::::::::::::::::::::::::::::::::::V:::::::E::::::::: HVO_1160 :::::::::::::::::::::::::::::::::::::::::::::S::::EG:::::::: NP4022A :::::::::::S:::::::::::::::::::::::::::::::::::::::::::::::: Hut0515 :::::::::::::::::::::::::::::::::::::::V::::::::::::::::::A: rrnAC1250 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu1720 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: consensus ENNKSLIFAGGTASGKTTSLNAVSLFIPSNAKIVSIEDTREVELPQRNWIASVTRPSFGD #oth ..2..11...............1......12..................1........21 hla2352 ::H:::::::::::::::::::::::::::::::::::::::::::::::::::::::S: Hbo0398 ::H:::::::::::::::::::::::::::S:::::::::::::::::::::::::::S: HVO_1160 ::D:::::::::::::::::::::::::::T:::::::::::::::::::::::::::A: NP4022A ::::::V::::::::::::::::::::::K::::::::::::::::::::::::::::S: Hut0515 :::::M::::::::::::::::I::::::::::::::::::::::::::V:::::::::E rrnAC1250 ::::::::::::::::::::::::::::::S::::::::::::::::::V:::::::::E Hmu1720 ::::::::::::::::::::::::::::::S::::::::::::::::::V:::::::::: consensus DDKGDVDEFDLLEAALRQRPDYIVMGEIRGEEGRTLFQVMSTGHTTYTTFHADSVGEVIK #oth 111..1.....................1......21.........111.....1....1. hla2352 :::::I:::::::::::::::::::::::::::::A:::::::::::::::::T::::L: Hbo0398 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::L: HVO_1160 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::L: NP4022A G:::::::::::::::::::::::::::::::::::::::::::::L::::::::::::: Hut0515 :QT::I:::::::::::::::::::::V::::::D::::::::::G:S:::::T:::::: rrnAC1250 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu1720 ::::::::::::::::::::::::::::::::::V::::::::::::::::::::::::: consensus RFTTDPINVSKTMFTALDLVSIQTQTRVQGNKVRRNKSLTEINHYDPENDEINVRDVYQW #oth ....2.......1........1..1...2.3......1.....1.11.......1.111. hla2352 ::::E::::::::::::::::V::S:::::K:::::::::::::::A:::::::Q::F:: Hbo0398 ::::::::::::::::::::::::S:::::::::::::::::::::::::::::Q:I::: HVO_1160 ::::A:::::::::::::::::::S:::G:::::::::::::::::::::::::Q::::: NP4022A ::::::::::::::::::::::::::::G::::::::::::::::::::::::::::::: Hut0515 ::::::::::::L:::::::::::::::::R::::::T:::::E:S:::::::::::::: rrnAC1250 ::::E:::::::L:::::::::::::::D::::::::::::::E:SA:::::::::::E: Hmu1720 ::::::::::::L:::::::::::::::D:S::::::T:::::E:SA:::::::::::E: consensus QAETDEFLQMGSSNTLEEIKFDRGWTQETLDEELFKRKVVLAYLIDRGLNTYTQVAATLQ #oth 1..1.1111..3.1...2.2.....3232123.112.2.2..1..24...1.11....2. hla2352 :::::::::::D:::::D:M:::::SRK::::::R::R::::::::::::S:A:::::F: Hbo0398 :::::::::::::::::::R::::::EDR:QH:::V:Q:::::::::::::::::::::: HVO_1160 :::::::::::::::::::::::::N:::VEL:I:::Q:T::::::::::::::::::F: NP4022A :::::Q::E::T:::::Q:R:::::::QR::S::R::::A:::::HE::::::::::::: Hut0515 :::S:::::::::S:::::::::::D:D:::::::M:::::::::EQ::::::E:::::: rrnAC1250 R:::::YI:::N::::::::::::::::K::::::::::::::::EK:::::::::::I: Hmu1720 R:::::YI:::N::::::::::::::::K:::::::::::::H::EN:::::::::::I: consensus AFINDPDTILTLIANDDLERSLEDLREMESVQINIDPEKEEMVPRPDPPEELREETADIL #oth ..1..23.123.1.322.13...........3.21.221.2.....1122332413432. hla2352 ::::::E:V:A:M::EE::::::::::::::L::V:RD::::::::::D:AG:::VER:: Hbo0398 :::::S::::::M:E::::::::::::::::H::V:::::D:::::::::DVLKLCR::: HVO_1160 :::::Q::::G:M:T::::::::::::::::H:::::DS:A:::::::::HV:QLAK::: NP4022A ::V::::::IS:::SG:::::::::::::::::D::::::A:::::::G:A::::::AA: Hut0515 ::::::K::M::::::Q:DH:::::::::::::TV::A:::::::::::D::LS:AT:V: rrnAC1250 ::::::::::::::::Q::L:::::::::::K:D:::::::::::::A:P:MV:::KQV: Hmu1720 ::::::G::::::::::::S:::::::::::K:D::EA::::::::EA:P:MLD:::::: consensus ANAE-PLFEDYRDRDADDVADAL-------DV---------------------------- #oth 33.322.14512324432112..3233223223132111111111132322223223233 hla2352 :E:::D::AE::G:MP:S:::::LDVAPARN:EAQPVADREALAQAADEAAALDGESSAT Hbo0398 :R::EE::P:::GK:::E:::::RHIADEP::SARY::::::::::EDHAELDALDEATR HVO_1160 RR::DE::P::::::VGE::E::NHMRDAP::EATP::::::::::GERDELDSLDASSG NP4022A EA:::::L:Q:::QP:GE::::::DIEPET:ID::::::::::::::::::::::::::: Hut0515 E::T::::DR:KEQART:IVS:::::::::--:::::::::::::::::::::::::::: rrnAC1250 D::Q::::NT:KS:ETP:IVS:::::::::--:::::::::::::::::::::::::::: Hmu1720 D::G:::::KFQE:ETP:IVS:::::::::--:::::::::::::::::::::::::::: consensus -----------------------------------ADGSSETP--------DGEDDDDT- #oth 222222323222233233232333322222322233333333322221333354231214 hla2352 NETDETDETEEGRIVADATPPIEGFEAGVTAEGSF::::DARDGDRTGDTS:::NA:::D Hbo0398 AGPELDAGEDGPSELDAGDDGPSELGAGVDDGPGELE:-ND::ALDAGTSD::TEE:E:T HVO_1160 :::::DPELDEGRDRAELDAGDDTPEIDGDRGPSSL::E::::ALDAGRDA:EG:T:::A NP4022A :::::::::::::::::::::::::::::::::::IGQ:::::::::::::SRV::E::P Hut0515 :::::::::::::::::::::::::::::::::::::VE:DDA::::::::LA:::::-: rrnAC1250 :::::::::::::::::::::::::::::::::::M:D:E:SA::::::::---:E:S-: Hmu1720 :::::::::::::::::::::::::::::::::::MS:DEG:E::::::::-QT::EE-: consensus --D------------ID--------------------------------------FGEF- #oth 3323332333344334.1111111111111132333323333332233322323222422 hla2352 DP:GGIDFDEPFDEG::VLDSRPDSGPVPGPNPNPAPDPNPEQADSGVRADADGGVT:VE Hbo0398 GEVTDGSDPEADLRGS:::::::::::::::DEDFGIEELLGEDVSEELEEDGWG::::: HVO_1160 SD:TDADDEPGGFGDD:::::::::::::::GPFGFNDDGVSFSDPNDGADLDDF::A:G NP4022A SD:ASASADGGEQRIT:::::::::::::::::::::::::::::::::::::::----: Hut0515 ::-::::::::::::V:::::::::::::::::::::::::::::::::::::::::R:: rrnAC1250 ::-::::::::::::::::::::::::::::::::::::::::::::::::::::::Q:: Hmu1720 ::-::::::::::::V:::::::::::::::::::::::::::::::::::::::::::: consensus --------------------------------------------D---VP--DD--KAGA #oth 222222222222222222333332233212233223232332332343322322434414 hla2352 VGVEDAKIDDEDAGDAATRKESGDTESDDEGEGDTATEGEDEDD:GNNADNI::WGFGSV Hbo0398 :::::::::::::::::ENADPEDTVNNDTVSEDTGRGDAARGK:GESDADHESGDYE:D HVO_1160 IEGGSESGAEPGSESGSTADQDDEPGRNDEGGHEDETWGGFEAV:ADDP:::::AGER:S NP4022A ::::::::::::::::::::::::::::::::::::::::::::AETS::DL::IRRT:T Hut0515 ::::::::::::::::::::::::::::::::::::::::::::-:::::::--:::::T rrnAC1250 ::::::::::::::::::::::::::::::::::::::::::::-:::::::--:::::: Hmu1720 ::::::::::::::::::::::::::::::::::::::::::::-:::::::--:::::: consensus EAREE-- #oth 1463241 hla2352 :S:::R: Hbo0398 :PS:GGE HVO_1160 DSG:GA: NP4022A DDPDR:: Hut0515 DGV:GE: rrnAC1250 ::DS::: Hmu1720 ::EG:::