7 genomes BUD1250 7 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC0157 HVO_0873 Hbo0666 Hmu0732 Hut0354 hla2365 NP0208A -

Pairwise sequence scores
Consensus score	1236	NP0208A	Hut0354	rrnAC0157	Hmu0732	hla2365	HVO_0873	Hbo0666
859	NP0208A	1243	712	655	735	750	694	692
884	Hut0354	712	1233	741	820	738	725	793
895	rrnAC0157	655	741	1222	883	729	758	755
991	Hmu0732	735	820	883	1240	759	832	776
945	hla2365	750	738	729	759	1382	805	841
945	HVO_0873	694	725	758	832	805	1207	874
929	Hbo0666	692	793	755	776	841	874	1217

180 symbols
consensus       -----------MNLTPETVRAEHDWVRDRADVVVPLINETRARLGDAFDTDVDPVTEAAY
#oth            11111111111.42.233.44.341122134121122.22.43..33.213.4222222.
NP0208A         ::::::::::::DV::SS:S:::ERL:ENER:P-EH::DV:V::::::GVE:T::SP:Q:
Hut0354         :::::::::::::V:RDR:ES:RT::A:::T:::::::QL:EH:::::::::EAI:DEQ:
rrnAC0157       ::::::::::::R::::::HE:Y:::QE:G:D::::V:::::Y::SQ:GV:::TL:DD::
Hmu0732         :::::::::::::V::::::R:R::::A::::I:::L:::::H:::::EVS:E::D::::
hla2365         MANPRPVNGEY:HI:S::::D::A:::::EP::::T::D::E:::RI:E:::::I:PE::
HVO_0873        ::::::::::::E:::AA:S:::::::A:::::::::::::R:::EQ:::R:SA:D::::
Hbo0666         ::::::::::::E:::DR:VE:SQ:::::SA:::::L::::NQ::EL:::E:GT::::E:

consensus       REAVDAVFADGDRAVNVAALVGLLRDLDVTDDYPGFVVDEVLGRELAATIAGGQPLRLLA
#oth            2211211....121...112221.14..141.........2...1...1...22.231..
NP0208A         :RE:::::::::::::::::C::::S::CHG:::::::::F:::K::::::::E:FA:::
Hut0354         ::::T:::::::L::::T:::::::E::::::::::::::F::::::::::::::RGT::
rrnAC0157       TA:I:E:::::::::::::::R:::G::::::::::::::L:::::::M:::E:::::::
Hmu0732         LA:::EL:::::::::::::I:::::::::::::::::::L:::::::M:::N:::::::
hla2365         :RE::::::::EV:::::GC:A:::::::AG::::::::::::::::::::::R::S:::
HVO_0873        :::::::::::EVG:::::Y:RI:KQ:::Q:::::::::::::::::::::::E::::::
Hbo0666         ::E:A:::::::V:::::GY:A:::E:::R::::::::::::::::::::::::::S:::

consensus       EATFHFADVHTHGDAD----GAAGADDLDAALAAGFQTRLPGWEWREGESPFAVARN---
#oth            1..1.31.24112332111133..2...1......1...1...4.22231..31554311
NP0208A         :::::V::I::::G::::::E:::::::E::::::::::::::::T::::::G:TG:G::
Hut0354         :::Y:Y:::::::SD:::::DV::L::::::::::::::::::K:TATA:::S:DPE:::
rrnAC0157       :::::L:::R::::DT::::AT:::::::::::::V:::V:::P:QQT:N::::E--:::
Hmu0732         :::::Y:::T:::TP:::::DP:::::::::::::::::::::P:::TD:::::GDS:::
hla2365         Q:::::V:::VSE::TADGA:::::::::::::::::::::::D:::::::::::SPTDE
HVO_0873        Q::::::::AV:T:--:::::P::R::::::::::::::::::S::::D:::DSR:-:::
Hbo0666         Q:::::::TM::T:--:::::T:::::::::::::::::::::::::RPN:::::::Q::