|
Pairwise sequence scores | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Consensus score | 3334 | HQ2014A | VNG0575 | rrnAC2170 | Hmu0244 | hla2647 | HVO_0836 | Hbo0699 | VNG2002 | hla1600 | HVO_1849 | Hbo1725 |
2172 | HQ2014A | 3397 | 1987 | 2107 | 2109 | 1938 | 2085 | 2060 | 1148 | 1117 | 1152 | 1199 |
2262 | VNG0575 | 1987 | 3333 | 2169 | 2124 | 1901 | 2046 | 2019 | 1357 | 1155 | 1233 | 1239 |
2530 | rrnAC2170 | 2107 | 2169 | 3401 | 2564 | 2224 | 2292 | 2199 | 1198 | 1303 | 1288 | 1312 |
2459 | Hmu0244 | 2109 | 2124 | 2564 | 3355 | 2143 | 2169 | 2138 | 1271 | 1356 | 1267 | 1319 |
2360 | hla2647 | 1938 | 1901 | 2224 | 2143 | 3340 | 2261 | 2300 | 1183 | 1285 | 1249 | 1345 |
2559 | HVO_0836 | 2085 | 2046 | 2292 | 2169 | 2261 | 3319 | 2509 | 1190 | 1354 | 1376 | 1391 |
2450 | Hbo0699 | 2060 | 2019 | 2199 | 2138 | 2300 | 2509 | 3811 | 1218 | 1259 | 1367 | 1395 |
1684 | VNG2002 | 1148 | 1357 | 1198 | 1271 | 1183 | 1190 | 1218 | 3363 | 1727 | 1803 | 1756 |
1748 | hla1600 | 1117 | 1155 | 1303 | 1356 | 1285 | 1354 | 1259 | 1727 | 3613 | 2305 | 2322 |
1825 | HVO_1849 | 1152 | 1233 | 1288 | 1267 | 1249 | 1376 | 1367 | 1803 | 2305 | 3404 | 2401 |
1852 | Hbo1725 | 1199 | 1239 | 1312 | 1319 | 1345 | 1391 | 1395 | 1756 | 2322 | 2401 | 3379 |
523 symbols consensus MDD--------------------------------------------------------- #oth .34655343322222222221222222211111111111111111111111111111111 HQ2014A :T:::::::::::::::::::::::::::::::::::::::::::::::::::::::::: VNG0575 :T:::::::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC2170 :::TD::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu0244 :TE::::::::::::::::::::::::::::::::::::::::::::::::::::::::: hla2647 :T:::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HVO_0836 :S:::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo0699 :HERTLQKMYEGAGIGGHGARPSQVGFPPLYCSLVAVRNRRTVWGTETVSDRTGGGENMT VNG2002 ::AVPR:::::::::::::::::::::::::::::::::::::::::::::::::::::: hla1600 :HSEPNETNAAVDPAAVERVRERRTELAP::::::::::::::::::::::::::::::: HVO_1849 :::LSPAVRE:::::::::::::::::::::::::::::::::::::::::::::::::: Hbo1725 ::NHNKERNA:::::::::::::::::::::::::::::::::::::::::::::::::: consensus -WIGRTFTSDAGWDHLERLVDIGNRMAGSPGERRAAEATRDALADAGARDARLDPFEIQG #oth 112141111472.52.25.12225..2.25.1.31324121.1543133315333.3323 HQ2014A ::::E::::NI::K::::::::DI:::::G:::H:::V:::::TAV:::N:H:EE::::: VNG0575 ::::D::::TT::T::Q::::TPT:::::D:::E::A:::::::QH-:D::W::T:PV:: rrnAC2170 ::::E::::TV::::::T:::::::::::G:::A::::::::::EY-T:::::SE:G::: Hmu0244 ::::E::::::::R::TE:::T:T:::::E:::A::::::::::EY-::::G:SA:D::: hla2647 ::::D::::::::::::S::::DH:::::D:::AGL:L:::::S::::::::IEE::::: HVO_0836 ::::D::::EV::N::::::::::::T::::::E:M:::::::ERV:::N::I::::::: Hbo0699 D:::K:::::F::::::S:::::D:::::::::E:M:L:::::EA::::N:HI:T::::: VNG2002 :AL:QAW:D:TP::V:TA:TALDS::::HA:D:::::HVV:::GE::V:::TTE::PLPV hla1600 :AL:::W:DGDP:RF:TD:TA::S:::::E:::::::IVA::FER::LSAVETR:::MAA HVO_1849 :AFA::WVD:RP:AF:TD:TA::D::::G::D:::STLVA::FT:::V:RVEF::::MAR Hbo1725 :AL::AW:D:ES::F:T::TR:::::G::N::::::TLVAE:FR:::VC:VHT::::M:A consensus WERGDSAIR--------AAADRAFDCIALPRSPAGTATGELVDLGYGLPEDFDDADLEGK #oth .3.133326433311116324455232...11.32523.21.2311.3142233512523 HQ2014A :A:ESA::-::::::::H:G:T:Q:::::::::S:N:M:::::I:H:::A::-:C::NE: VNG0575 :T::::::E::::::::TP::TTA:T:::::::::::A::F:::S::::G::E::::D:A rrnAC2170 :::::::VHAGGS::::PV:TQ:HE::::::::::EV::::::V:H::::::E:::C::Q Hmu0244 :::EA:::TADGE::::TV:SDDRAV:::::::::SV::R:::A:H::::E:AE::C:DA hla2647 ::::::E::RDEE::::VV:SGQNA::::::::S:E::::F::::::V::::-:D::T:: HVO_0836 :::::::V-::::::::Y:::TTQ:::::::::::::S::::::::::T:::-:R::S:: Hbo0699 ::::::RV-::::::::VTDGTTQ:::::::::SDASS::F:::::::::::-E:::S:: VNG2002 :T:::C:L:VT:::::::PDE::::A::::YA:::::::R::SA:::A:AG::GV:V::A hla1600 ::::SATL:VTAPGRDG:::T:E:EAL:::Y::G:SV::::::V:::T:AEI:EREV::R HVO_1849 :T:::TTLDLT:::::::PDE:R:EAV:::YA:PA:VS:P:::V:::T:SEI:A::VD:A Hbo1725 :S::R:RLSL:::::::E:DG::::TV:::Y::S:DV:::::YV:H:T:DEV:EH:VA:: consensus VVVASSDVPDGYDRFIHRREKYYHAVEAGAAAFVFVNHVDGQLPPTGSVGTGEAPIGEIP #oth 22312223.3332.32..1..132.241..31.114.124.4..2..1133424121331 HQ2014A :IL:A::I::WH::YV:::::::R::N:::S::IYR:::N:C:::::::::E:::::::: VNG0575 I:MVAA::::W:::HL::::::A:::A::::G::YM:::A:C::A:::::::DD:::::: rrnAC2170 I:L:R:::::W:::Y::::::::::::::::G:IYR:::::V:::::::::AD::::::: Hmu0244 ::I:R:::::W:::Y:::::::::::::::::::Y::::E:M:::::::::P:E:::DV: hla2647 ::MV:::T::SV:::::::::::::::::::::::A:::E:T:::::::::AD::::D:: HVO_0836 :::V:TT:::H::::::::::::Y:::::::::::A:::P:::::::::::AD::::D:: Hbo0699 ::MV::T:::H:E:::::::::::::::::E::::A:::E:C:::::::::E:S:V:D:: VNG2002 :::::TGS:P:GE:-V::M:::GR::AG:::G:::H:QR:::::Q::ALRG:RV--::R: hla1600 IA:::TTT:E:G-::V::M::FGY:LD:::VG::::::L:::::::::LTF::E--A:AV HVO_1849 L::::TTT:A:G-::V::M::FNY:IG:::VG:::::::P:::::::ALRYD:E--AAA: Hbo1725 I::::TTT:P:G-::V::M::FGY:ID:::E::::::::P:::::::ALKF::E--AVA: consensus AVGVSKETGARLARRAEG------------EAATLSVDAETPDATSQNVHAELGPDTDEE #oth .21.15.2.32.53233311111111111146231515232442113.32152..1.253 HQ2014A :::::::V:K::S::FT:::::::::::::DDVVVNTHVDIY:T::::I::D:::K:ENA VNG0575 :::::T:::T::S::F:H::::::::::::DTV::T:::D:H:::::::::T::::::A: rrnAC2170 :I::AS:::::::::YA::::::::::::::NV:::::C:::K::::::::::::::::R Hmu0244 ::::AR:::::::::Y:::::::::::::::T::V:::CT:::::::::::::::::::A hla2647 ::::::::::S::::R:::::::::::::::DL:VA:NC:::::::G:AV:D:::::::Y HVO_0836 :::::::V::::R::FD:::::::::::::DEV:VD:TC:A:A:E:G::::::::::::: Hbo0699 :::::::V:T:::::F::::::::::::::::V:VE::C:::P:E:G::::::::::ED: VNG2002 :AS::G:V:SW:EAY::RG:::::::::::G::E:T:::H:EPG:GV:T:GV:::::PT: hla1600 ::::::::::W:REY:A:GDGGVAAESSPAAQ:E:::T:T:EPGE:R::VGHA::::::R HVO_1849 :::::A:::SW:TDY:ARG:::::::::::GE:::A:G:::TPGE:R::EGRV:::::R: Hbo1725 :::::::S::W:KDD::DG:::::::::::TM:R:T:E:::TTGE::::VGR:::::::: consensus LLVTSHVDAHDIAEGAMDNGAGTAMVVEVARALAAREDELDTRVRFVAFGAEEVGLVGSE #oth 22142.5....121..3..12.2.33222.33.142163.421.3344212..3..2.15 HQ2014A VFL:::::::::G:::A::A::::I:L:::::::Q::S::::::HLLVY::::I:::::Q VNG0575 ::::::::::::TD:::::::::::A::L::I:::::SA:::::H::C:::::::::::H rrnAC2170 ::::::A:::::::::::::::::::::::::::G:::::A:::E::::::::::::::N Hmu0244 V:::::::::::::::::::::::T:::::K::::::G::::::E::::::::::::::S hla2647 :V:SC::::::L::::::::::::TI::::N::::::E:::::::::G:::::::::::S HVO_0836 V:::::L::::::::::::::::::::::::::::::::::::::::C:::::::::::: Hbo0699 ::::::L:::::::::W:::S:::::::L::I::E:::::E:::::I::::::::::::G VNG2002 VV:IA:H:::::G:::L:::C:V:TL:AA::V:::M:SV:E::::LGTVSG:::::::AS hla1600 ::LLA:Y:::::::::L:::C:I:T:ATA:GI:T--:AD:PLG:DV::V:::::::L::: HVO_1849 ::LCA:F:::::::::L:::C:I:V::TA::L::--:MD:ALG::V:GV::::L::T::: Hbo1725 I:LLA:Y:::::::::L:::C:I:V::TA::I::--QFD:SVG::IAGV:C::T::T::: consensus HLADRL--DLDRVKAVVNVDGVVRGRTLKAYTHGFDALAAAAEAVADRFDHPIDVEPELH #oth 43134311342513112.3.12134.1.4364.32253431344.344441114384234 HQ2014A YD::SR:::HETI::I::N:::::N:::VCHA::::D:ID::DR::A:M::::::P:::N VNG0575 :D:AQR:::::D:R::L:L:::::E::::L:::R::::GD::N::S:T:A:::T:A:A:N rrnAC2170 R::GET::T::D:T::L:F::::Q:::::C::::::::T::::D::::L::::SLT::QG Hmu0244 R:::ET::::ED::::L:L:::::::::QC::::::G:IE:T::::::L::::TTS:TMN hla2647 QF:AGV:::P:H::::::::SN:F:::::LDH::::P:E::G:R:S:::::::ALGE:QV HVO_0836 YE:E::GD:RAN:::I::N::::A:::::LT:::::E:E::::T::E::::DVSTL::QL Hbo0699 :ES:::GDEREHI:::::N::::F:::::FD:::::::E::::S:G:Q::::VSIV:::V VNG2002 A:::S::::T:A:R::::L::AG:Y:::R:FL:ATP:F:DVLA::E:AAG:::::VDT:: hla1600 Q::E::::::::::G:I::::AG:F:D:V:LA:ASETA:SV::::STATNQ::A:DA:P: HVO_1849 :::::::::::::A:::::::AG:F:D:V:HS:TSE:T::V:TR:GNETR::V:I:::P: Hbo1725 :::EQ:::AH::I::::::::AG:F:D:I:M::TSE:T:SV::R:::ETR:::QI:T:P: consensus PHSDHWPFVRAGVPGYQLHSETGGRGRGWGHTHADTLDKLEDRNLREQAILLAELVVELA #oth .2..1.11353.1.13235323423.......4...21.125.23..112.31312331. HQ2014A :::::::Y:TW:::::HIRAD::DV:::::::::::::::SV:D::::::::T:::I::: VNG0575 ::::::AY:KH:::::HAT:DAA:-:::::::S::::::::L:TF::H:::::A:AAR:: rrnAC2170 :::::::::QR:::::HVT:::::E::::::::::::::::P:TF::::V::T::A:A:: Hmu0244 :::::::::QW::::IHVM:::D:E::::::::::::::::P:T:::::V::T::A:::: hla2647 :::::::::ER:I:::MVSG::E:::::::::G::::::::S::::::::::TA:::D:: HVO_0836 :::::::::AH:::A:MVG::KE:::::::::::::IE:::S:T::::::::T::T:::: Hbo0699 ::::::::TQW:::::MISC::A:::::::::F::::::::V:::::::::::Q:::D:: VNG2002 :Y::::::L:::::AV::::V:PE::::::::Q:::R::VDA:T:::HGM:A:L::R::: hla1600 :F::Q:::::R:::AI::::DS:D::::::::::::R::VD:::V::H:M:I:L::A:F: HVO_1849 :F::Q:::::::::AL::R::S:E::::::::::::R::VD:::V::HGM:T:LI:R::: Hbo1725 :F::Q:::A:::::AL::::DS:E::::::::::::R::VD:::I::H:M:T:L::A::: consensus --DDDREIPRADPAEIAAALEDADLAEGMKATGDWPY-W---- #oth 114337552132533226313422623..32313..3433111 HQ2014A ::S::TTVAHRP:SA::DQ::RENR::::QVI:::::TKTIDR VNG0575 ::::GFAVAH:SE:DV::G:T::G:::::QI:::::::-:::: rrnAC2170 ::::SARPAHK::::::N:::AQN:::::RI:::::FGD:::: Hmu0244 :::EE:AL::R:T::::T:::EQ::::::QVV:::::DD:::: hla2647 ::G::VSTA:KPTD:::S:::QEGK:T:::I:::::F:-:::: HVO_0836 :::A:::::H::::D::::::AE:Q:::::V:::::F:-:::: Hbo0699 ::::EM::QHK:E:::IE:::EE:H:A:::I:::::::-:::: VNG2002 ::RE:TT::::SQ:TLRQR:V::GMRS::V:ADV::AA:D::: hla1600 ::APE:DA::L:RDDLI::FR:::FET::R:ADL::AG:E::: HVO_1849 ATAA:G::::L:-D:L:::FR:::FET::::A:I::DG:E::: Hbo1725 ::GE:-:V::L:TE:L:::FR::GFET::R:ADL::DA:E:::