| ||||||||||||||||||||||||||||||||||||||||
| Pairwise sequence scores | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Consensus score | 4165 | rrnAC0098 | VNG0162 | HVO_A0551 | HVO_A0552 | HQ1699A | hla2499 | NP3422A | rrnAC0847 | HVO_0896 | Hbo0642 |
| 2511 | rrnAC0098 | 4128 | 2188 | 2185 | 2157 | 2219 | 2267 | 2411 | 2377 | 2362 | 2382 |
| 3174 | VNG0162 | 2188 | 4622 | 2792 | 2754 | 2759 | 2962 | 2930 | 2997 | 2862 | 2966 |
| 3291 | HVO_A0551 | 2185 | 2792 | 4125 | 4016 | 2725 | 2870 | 2792 | 2940 | 2952 | 2997 |
| 3226 | HVO_A0552 | 2157 | 2754 | 4016 | 4058 | 2675 | 2806 | 2736 | 2882 | 2902 | 2931 |
| 3258 | HQ1699A | 2219 | 2759 | 2725 | 2675 | 4155 | 3025 | 2938 | 3038 | 3165 | 3284 |
| 3526 | hla2499 | 2267 | 2962 | 2870 | 2806 | 3025 | 4164 | 3167 | 3257 | 3176 | 3287 |
| 3486 | NP3422A | 2411 | 2930 | 2792 | 2736 | 2938 | 3167 | 4135 | 3369 | 3184 | 3274 |
| 3589 | rrnAC0847 | 2377 | 2997 | 2940 | 2882 | 3038 | 3257 | 3369 | 4172 | 3298 | 3398 |
| 3502 | HVO_0896 | 2362 | 2862 | 2952 | 2902 | 3165 | 3176 | 3184 | 3298 | 4151 | 3472 |
| 3658 | Hbo0642 | 2382 | 2966 | 2997 | 2931 | 3284 | 3287 | 3274 | 3398 | 3472 | 4172 |
606 symbols consensus ------------------------------------------------------------ #oth 111111111111111111111111111111111111111111111111111111111111 rrnAC0098 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: VNG0162 MERRAQRGGRRRPELAGRCLRCRAATHRPCEGSPWALALICTALGVPTPQTTITDVCDGG HVO_A0551 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HVO_A0552 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HQ1699A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: hla2499 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP3422A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC0847 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HVO_0896 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo0642 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: consensus --MKKPLLVTDFLDRARRYYGDEEAVVATDGERFTYAELGERADRFSAALQARGIEKGDR #oth 111523211.2.11..143.2.51111121.411..4.222.11221211344.121.11 rrnAC0098 ::::REM:T:::I:::ADI:D:VTGI::H::TEY::::VN::VNQLAH::SD::VS::S: VNG0162 GV:HR:::::::I::::T:::::T:::::T:R:Y::S::AD:::::::V:::A::DS::: HVO_A0551 ::------:::::::::T::::Y::::GV:::::::::F:::V::::::::S::V::::: HVO_A0552 :::::Q:::::::::::T::::Y::::GV:::::::::F:::V::::::::S::V::::: HQ1699A :::Q::::::::::::::::::C::::G:::G:Y::D:::T:::G:::::RRM:V::::: hla2499 :::R::::T:::::::::H:A:::::L::::T:Y::::::::::::::V::EC::::::: NP3422A :::RR:::::Q::E::::N:::Q::::::T::::::N::AD::::V:K:::E:::::::A rrnAC0847 :::H::::T::::::::E::::K::I:::T::::::D:F:::::G::::MA::::::::: HVO_0896 ::::::::::E::::::::::::::::::T::::::D:::::::G::::::S::V::::: Hbo0642 :::E:::::::::::::Q::::K::::::T:D:Y::E:::::::G:::::A:H::::::: consensus VAVLDPNTHYHLEAAYGAMQLGAVHTPLNYRLTPDDYEYILSDADADAVYADYEYAEKIE #oth ..1.1.....21.11112212.1213......422132.3.3.2214211..232.3212 rrnAC0098 ::L:A:::::FI:TL:ATNK::::FV::::::D:AKI::::N:CE:AT:I:::DF:::VQ VNG0162 :::::::::::::::::::::::I:::::::::::::A:::A::G:::I:::AA::DRV: HVO_A0551 :::::::::::::::F::::C::L:V:::::::T:::::L:::SG:TV:::::Q::G::: HVO_A0552 :::::::::::::::F::::C::L:V:::::::T:::::L:::SG:TV:::::Q::G::: HQ1699A :::::::::::::::::TF:I:GI::::::::IAE::::::::::VSV::::H::::::D hla2499 ::::::::::::::::::::I:::::::::::::::FS:M::::GV::I:::A:::ANV: NP3422A :::::::::::::::::S:::::I:A::::::L:::L::::N:C::K::I::::L::::: rrnAC0847 ::::::::::Q::::::T::::::::::::::V:::F:::::::EV::::::::::D::: HVO_0896 :::::::::::::::::S:::::::M::::::V:A:F::V:N:::VT::::::AF::::D Hbo0642 :::::::::::::::::T::::::::::::::V:A::::::T:::VK::::::::::::: consensus AVRDDVPTETFVTNDPAAV----DGDWEDFDEILAEADTD-YERPEMDEDDLITINYTSG #oth 21.121.122.2121344411211.2.33223422334223121.2.3..1321...... rrnAC0098 P::::I:A:::IGYE:DRI::::::E::AYSG::DGQP:AEPD::::A:::DAS:::::: VNG0162 ::::QI::T::I:D:::::::::::::Q:A:AL::D::P:D:D::D:A:::V:::::::: HVO_A0551 :::::::A:V:::::::::::::::::L::EAF:D:::A:D::::::S::E::::::::: HVO_A0552 :::::::A:V:::::::::::::::::L::EAF:D:::A:D::::::S::E::::::::: HQ1699A TI:::::::::I:::ISES::NTE:K:HE::D:V:QS-:E::S::S:S::EIV::::::: hla2499 :I:EE::::::L:::AD:I::::E::::S:::A::D:NP:A::::::::::V:::::::: NP3422A :::::I::DI:I:::ATET::::::E::::::VIDGVGP:::DE:::::::V:::::::: rrnAC0847 PI::E:::DI:::::TD:::::::::::S::::IE::G:::::::::::::::::::::: HVO_0896 ::::EI:A:I::::::EKAAEST::E:L::::LV::S-:::::::::::::I:::::::: Hbo0642 :I:::::::::::::T:Q:::::::::LS:::LI::S-::::D::::T::E::::::::: consensus TTGDPKGVCRTHRTETLHAYLVSIHQEISDDDVYLWTLPMFHVNGWGHIYAITGMGAKHV #oth ........2....3.23.123335.24.3.2.1.........2.....1111..6.12.1 rrnAC0098 ::::::::V::::::SW:SLVLNQ:M::R:::T:::::::::C:::::T:::::T:GT:: VNG0162 :::::::::::::N:VV::L:L:T:HT:T:T:T:::::::::A::::::F::::A::T:: HVO_A0551 :::::::::::::::S:::Q::T::HH:G::::::::::::::::::::::V::R::::: HVO_A0552 :::::::::::::::S:::Q::T::HH:G::::::::::::::::::::::V::R::::: HQ1699A :::::::::::::::::::QY:::::Q:::G:::::::::::::::::::::::L:G::: hla2499 :::::::::::::A:::::::IT:::::T::::::::::::::::::::::::::::R:I NP3422A ::::::::M::::S:::::::T::::::::::::::::::::::::::::S::::::::: rrnAC0847 ::::::::::::::::::::I:AL:::::::::::::::::::::::::FSV:::::::: HVO_0896 :::::::::::::A::I::::I:M::D:G:::::::::::::::::::::::::H::::: Hbo0642 :::::::::::::::::::::ITS::H::::::::::::::::::::::::V::N::::: consensus CTRGVDAEAVFDAIREEDVSYLCAAPTVLNILMDYYDAHDG-VATTGDNDVRAATAGSAP #oth .1.121115212212413..12.2.....12.53223431123322.141..211..1.1 rrnAC0098 :Q:TF::ADT:RRV::Y:::FM:G::::::K:IQH:R:N::D:V:Q::R:::I::::::: VNG0162 :::::::AS:::T:QA:A::::::::::::M:L::HE:::-:::A:::A:::V::::::: HVO_A0551 :::::E::::::::T:::::FF:C:::::S::RE:AEE::-:P:YA:::P::VTA::::A HVO_A0552 :::::E::::::::T:::::FF:C:::::S::RE:AEE::-:P:YA:::P::VTA::::A HQ1699A ::::I:::WI::T::S:N::::::::::::::::R::SEG:::K::::AP:::::::A:: hla2499 ::::::V:::::R::A:::::F::::::::M:G:H:AD:G-:G::::::::::::::A:: NP3422A ::::::::TI:E::QS::::::::::::::M:L::::S::-::E::::S:::V::::::: rrnAC0847 ::::::::GI:::V:T:::::::G::::::::A:R:A::::EIE:::A::::I::::::: HVO_0896 :::::E::::L::::D:::::::::::::::::KH:REEG:::E:::ASP:::::::A:: Hbo0642 ::::::::WI::TV:::H:::M::::::::M::::::KQG:::E::::VP:::::::A:: consensus PEATIRTVEDEFGWYLKHVYGATETGPLITTSDARRLFDDDGDDRFAVKKRQGIGYLGTD #oth 12.1.131.2211.42412..1...1.111..225.424241451232123..324.1.1 rrnAC0098 AT:::ER:::::::RII:I::L:::A:I::::NSP:RIAER:RE---L:VK::SET:C:: VNG0162 ::::::A::SALD:S:M::::::::::::A::::D::LAAG:GS:A:MQ::::::L:::E HVO_A0551 :S::::HT:S::::EFTQL::::::::::A::::N::IP:E:GL::SL:Q:::VAP:::: HVO_A0552 :S::::HT:S::::EFTQL::::::::::A::::N::IP:E:GL::SL:Q:::VAP:::: HQ1699A :::::::::E::::D:L::::::::::::::::VD:RL::-S:N::GL::K::::::::E hla2499 :::::::::E::::D:::::::::::::V:::::K:H::A:S::::::::T::::::::: NP3422A :::::::::::::::::::::::::::::::::S::F::::SE:::::::T::L:F:::: rrnAC0847 :::V::::::D:::::::::::::::::V:::::::F:E:GSNA::S::::::::::::: HVO_0896 ::::::::::::::R:M:::::::::::::::E:G:YLT:-:::::G:::K::::::::: Hbo0642 ::::::::::::::::M:::::::::::::::::::F::::S::::::::Q::::::::: consensus VRVVDEDGEDVPRDGETIGEIVVRGNQVMDRYWNKPEATEEAFNDRLEGYYHMGDLAVVD #oth 211..13.22.1313212..1..3.....11.12..13.23..22.31.11.1..1.211 rrnAC0098 I:I:::::T::::::A::::V::Q::::::::L::::I::::::::A:::F:T::::AW: VNG0162 L:::::H:N:::::N::::::::S::::::::::::D:::R::T::VD::F::::F:::: HVO_A0551 L::::D:::Q:::GDA::::V::::::::EK:::::DE:HD::::::::W::T::::::N HVO_A0552 L::::D:::Q:::GDA::::V::::::::EK:::::DE:HD::::::::W::T::::::N HQ1699A :T::::T::R::W:::S::::::::::::::::K:::Q::T::S::ID:::::::::::: hla2499 ::::::N::::AP:::::::::::::::::::::::D::::::SE::::::::::::::: NP3422A ::::::::N::::::Q::::::::::::::::LG::::::::::::V::::::::::T:: rrnAC0847 ::::::::N:::H:D::L::V::::::::::::::::Q:::::S::V::::::::::T:: HVO_0896 ::::::::T:::::EQSV:::::T:::::EK::::::E:::::SA::::::::::::::: Hbo0642 :::::::::::A:::Q:V:::::::::::::::::::::D:::T:::::::::::::::: consensus EDGMIAIQDRKKDIIISGGENISSIELEDTLFDHDAVGDVAVIPAPSEEWGETPKAFVVP #oth 12.125.3..1.............1....2.12.13.321..1.4.213...1.1.1... rrnAC0098 :::::Q:M::R::::::::::::::::::E:Y::PG:LKA::::T:::D:::::M:I::: VNG0162 DT:FVS:L::::::::::::::::::::::::E:::::E:::V:S:HDD::::::::::: HVO_A0551 ::::::::::::::::::::::::V::::A::::::::::::::::::K::::::::::: HVO_A0552 ::::::::::::::::::::::::V::::A::::::::::::::::::K::::::::::: HQ1699A :N:F:E::::::::::::::::::::::::::S::::S::::::V:::::::S::::::: hla2499 :::FVS::::::::::::::::::::::::::E::V:S::::::::D:R::::::::::: NP3422A :N::MR::::::::::::::::::::::::::E:PE:S:::::::::D:::::::::::: rrnAC0847 ::::V::R:::::::::::::::::::::::YE::::S:::::::::D:::::::::::: HVO_0896 :N:F:S:::::::::::::::::::::::::::::E:A::::::V::D::::S::::::: Hbo0642 :N:F:T::::::::::::::::::::::::::::::::::::::M:::::::S::::::: consensus ASGDPDNPGVTAEELIAFTRERLAGYKVPREVEFVAELPKTATGKIQKYELREREWEDED #oth 44223432311342152231342.31.423221.1411.3.....1......26224323 rrnAC0098 TA----DSDA:EQDILE:L:::V:S::::AGID:RDS::E:::::::::::::EY:QEQE VNG0162 :::::N:::::TTA:VEY::AE::SF:TV:R::::D:::T:::::V::::::AA:FA::E HVO_A0551 :N::VE:::::::::T:Y::D::::::AI::F:::::I::::::::::::::K:::D::E HVO_A0552 :N::VE:::::::::T:Y::D::::::AI::F:::::I::::::::::::::K------- HQ1699A VTAN:QTSN:SES:::EHCKGM:::::I:::I:::N:::R:::::::::::::S:::G:E hla2499 E:::::DA:A:P:::K::V:::V:D::T:G:::::::::T::::::::::::::::DE:: NP3422A E:::::D:A::ED::T:::::N::S::MV:R::::E:::T:::::V:::::::Q:::::: rrnAC0847 N::::::::::::D:RT::::Q::T:::V:R::::E:::T:::::V:::::::Q:::::: HVO_0896 T:::::A::::::A::::C:::I:T::::K:::::T:::::::::V:::::::::::::G Hbo0642 :H::A:D:::::DD:::Y::::I:T::::K:I:::T:::::::::::::::::K:::::: consensus RMVGQG #oth 423122 rrnAC0098 ::I::E VNG0162 SL:::: HVO_A0551 :::::: HVO_A0552 ------ HQ1699A ::::E: hla2499 ::::E: NP3422A A::::: rrnAC0847 E::::: HVO_0896 ::M:E: Hbo0642 ::::::