7 genomes BUD1344 9 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC0433 HVO_1549 Hbo3501 Hbo3587 Hmu0283 Hmu1109 - hla2438 NP2696A HQ2670A

Pairwise sequence scores
Consensus score	1232	Hmu0283	Hbo3587	rrnAC0433	hla2438	HQ2670A	Hbo3501	HVO_1549	Hmu1109	NP2696A
511	Hmu0283	1225	424	412	434	411	406	412	460	441
585	Hbo3587	424	1244	479	546	475	480	444	485	497
943	rrnAC0433	412	479	1203	821	833	822	739	737	711
1001	hla2438	434	546	821	1228	862	883	817	813	833
972	HQ2670A	411	475	833	862	1241	895	883	715	728
1001	Hbo3501	406	480	822	883	895	1239	893	767	804
941	HVO_1549	412	444	739	817	883	893	1222	729	755
863	Hmu1109	460	485	737	813	715	767	729	1241	824
886	NP2696A	441	497	711	833	728	804	755	824	1244

174 symbols
consensus       ---MALDVEPPEPPELSPAVDPNEYD--DAEVVGD--DYRREELEEFLQDGAWEDAFEEW
#oth            12215.1.34.41.3.357333421112132243425112.311342143.1.331.43.
Hmu0283         ::::::::PV:D::S::GPQTRG::EAI:N:I:DTSD::::::V:G:F:A:T:Q::::::
Hbo3587         :::::::::F::::D::NRGM:R:FE:LQE:TL:S:E:FY::D::DL::E:::KEG:N::
rrnAC0433       ::::T::::T::R::::TG:AAD:::::::::Q::::E::::::A:A:D::::A::::::
hla2438         ::::S:::DS::::::-A:::::::E::::::A:G::E:::DD::AL:HE:::::::S::
HQ2670A         :MH:::S::T:T::S:ADN:::::::::::::::::T::::K::G:L::::::A::::L:
Hbo3501         ::::T::::::S::::::SI::::::::::D::::DN::::D::SA::SE::::E::A::
HVO_1549        :::-M:::PV:A::S:-:T::::Q::::::Q:AA::A:FK:A::::::EA:::AG:::A:
Hmu1109         ::::P::::::A::::DT:::ASD:::::VD:DTN::E:::::::T::::::::Q::T::
NP2696A         MIR:G:::T::D::A:-:EQ:TD::E:::VD:Q:T::::::D:::T::HN::::E:::R:

consensus       AADTDLDEDQWAIVLDLGLIEAFDFFWDDFADRVGYHAPGLPEDWKERELHPDLDSWGTV
#oth            3441323253341152121425...1..2222111121.21.2.1212332222311532
Hmu0283         TTSAG:STAEF:V:ER:D:::::::Y::PAS:E:::R::E::D:AADEYALD:P:-----
Hbo3587         :EY:::::G:VR::S::::FQ::::Y::PTE::LRFDT:TI:D::R::DATES:::-S::
rrnAC0433       :T:AS::A:::K::T::::::E::::::S::G:::::::::::::R:::I:::I::::::
hla2438         SDT::M::ED:::AV::::VSR::::::::::::::::::::::::::D:::::::::::
HQ2670A         VS::S:T::E:R::::IE:LSQ::::::::::::::::::::::::::DI:::IN::K:I
Hbo3501         :::::VTA:E::::T::::GSD:::::::::G::::::::::Q::::Q:V::E:S::KQ:
HVO_1549        ::E:PVT:A::E:::::D:LSH::::::::::::::::::I:::::::::::E:T:::E:
Hmu1109         :ET:::::TAFE::SE:D:V:Q:::::::::Q:::::::::::::R::S:::::N::D::
NP2696A         ::E:::E:RAYD:AD:::MF::::::::::::::::::::I:::::::::::E:S::E::

consensus       SGINAGLTELGQIVCEVLKDDYID---------WEAE-YEAPDDLP-DF-----
#oth            13.1211321.251221.331.23111111111134123343112213232211
Hmu0283         -::DMA:DS::R::S:::EN::VL:::::::::RDDDDFGFF::EDVAYGDREE
Hbo3587         :M:DDA:QD::RA:Y:T:-E::LERNDEATDSG:GK:T:GKR:E--:--:::::
rrnAC0433       :::::::::F::V:::::A:E:L:::::::::::::::EVDA::::::::::::
hla2438         :A::::::::::::::T::EE:::::::::::::::D:F::::::::::EE:::
HQ2670A         :S::::::::::LT::::::E::T:::::::::::S::::::E::::::S::::
Hbo3501         :S::::::::::T::D:::::::E:::::::::::S::::::::::::::::::
HVO_1549        :S::::::::::D::D:::::::::::::::::::S:::::::::::::G::::
Hmu1109         ::::::MA:::RT:S:T::A::V:::::::::::QTD:PDL::::::E:GDE::
NP2696A         :::::AMA:F:DV:SRT::EE:V:::::::::::::D::D::::::::::::::