7 genomes BUD1378 7 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC1877 - Hbo0741 Hmu0829 Hut1882 hla2696 NP2240A HQ1154A

Pairwise sequence scores
Consensus score	1648	HQ1154A	Hbo0741	hla2696	Hut1882	NP2240A	rrnAC1877	Hmu0829
1011	HQ1154A	1818	922	823	876	917	831	873
1071	Hbo0741	922	1650	964	957	989	855	910
1210	hla2696	823	964	1739	1014	1047	1030	1017
1148	Hut1882	876	957	1014	1655	1060	977	985
1298	NP2240A	917	989	1047	1060	1663	1036	1082
1257	rrnAC1877	831	855	1030	977	1036	1710	1238
1334	Hmu0829	873	910	1017	985	1082	1238	1692

252 symbols
consensus       ------MDFDSFTLAAATADLSDEPAAREHADGVEFRMDLA------DDPLAQLDAYD--
#oth            11112244.22.3.2.1111.33.11.122..52.1.1.1.111111311123124.111
HQ1154A         MTSTQAVS::T:Q:::::::::::S::SDY::I::::L:::YADTSLP:::TAIS:::HS
Hbo0741         ::::MFLS::::V:::S::T:AA:::::::::V:::::::::::::::::::E::D::::
hla2696         ::::::-M:EE:V:T:S:::::E::Q::::::A::::::::::::::S:::::::T::::
Hut1882         :::::::N:S::R:::S::::TE:::::::::L::L::::::::::::E::T::SN::::
NP2240A         ::::MAIP:ET::::::::::G::::::::::C::::::::::::::AE:RSA:GS::::
rrnAC1877       :::::::::E::::L:::D::GV:::::VD:::L:L:::F::::::::E:::::::::::
Hmu0829         ::::::::::::::L::G:::::::::::D:::I:L:::F:::::::::A:SM::D:E::

consensus       GELPLLVTNRPEWEGGEA--DDAGRLDALETAVEHDAVAAVDIELAALEGNA-------A
#oth            13..21....22....12232232.132.22.232...4...2..211235411113331
HQ1154A         SS:::I::::::::::AYDGETID::EM:I::AK::::I::::::ET:KSQH:::::::G
Hbo0741         :T::::::::AS:::::SEA:EE:::AS::R:ARY:::V:::V::N:::TTR:::::::G
hla2696         ::::::::::AS::::::::::L::Y:::T::LT::::::::::::::R:::PEGEESH:
Hut1882         ::::::::::::::::::::A:::::A:::A::TD:::::::V:::TARDGD::::::::
NP2240A         :::::::::::T::::::::::E:::P:::A:::::::G::::::::::D::::::::A:
rrnAC1877       :D::I::::::T:::::::A:T::::::::::L:::::T:::L:::::::AG::::DHD:
Hmu0829         :D::V:::::V::::::::P:::A::::::::::::::T:::V:::::::EG::::ACD:

consensus       ARLADHAREHDAAVVVSTHDFESTPARSALVDRLERAAAYGDVGKLAVTAQDRDDALALL
#oth            6523442134212111.1.1.13..45341332.33.235..11.3.2..5335.1.221
HQ1154A         KKV:RDI:NSG:VIIA:::::T:::QQ:V:HE::HT::QL::I::::::::THR:::RV:
Hbo0741         VTA:ERL::SNV::IA:V::::R:::T:E:RRL:HE::TV:::::V::::NS:H:::R::
hla2696         TA:RNT:::T:V:::::V:::::::EPA::::L:AD:::E:::::::T::AASE::::MI
Hut1882         DG:IET:H:::V::::::::::G::GMGD:QEM:RE::QF::::::::::ETP::V:D::
NP2240A         RS:::::HGN::S:::::::::A:::::T:::L::::GT::::A::::::T::S:::DV:
rrnAC1877       G:V::A::DRG:S::::::N:::::D:E:I:S:::::C:H:::::M:S:::SP::V::M:
Hmu0829         ::VVS:::D:G:S:::::::::A::DEA:::::::::CE::::::I:T::R::G:V::::

consensus       EATHEATAEGDTVATMAMGEAGRHTRAVAPLYGSRIGYAPVDPADATAPGQYDLATLREL
#oth            3..231134.32....2..12.3.1.2.1.1...2......31221......1121.251
HQ1154A         A::EQ:SQW::::::::::AL:Q:::V::::::::::::::N:T:::::::::IK::S:M
Hbo0741         ::::A:::W:::::::G:::::K:::::::V:::K::::::HAGEE::::::::ES:AH:
hla2696         ::::::::A:HR::::C:::P:::::::T:::::K:::::::::N:::::::P:::::G:
Hut1882         V::RA::V::H:::::::::::::S::::::::::::::::E:TN::::::::::::AD:
NP2240A         A::::::QK:T:::::::::::S:::::::V:::Q:::::::::E:::::::::::::::
rrnAC1877       G::R:L::::EQ::::C::A::::S:::::V:::::::::::::::::::::::::::T:
Hmu0829         ::::RL:ET:E:::::::::::::S:P:::::::::::::::::::::::::::::::R:

consensus       VDQLA-------
#oth            244.63331221
HQ1154A         I:T:THTKVEDD
Hbo0741         TES:-:::::::
hla2696         ::G:RGDDVGE:
Hut1882         :AE:GGQ:::::
NP2240A         :SS:::::::::
rrnAC1877       :G::QSDA::::
Hmu0829         ::::S:::::::