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[N] (FlaD) COG3351 Putative archaeal flagellar protein D/E
6 genomes BUD1395 6 proteins
a Hsa
Halobacterium
sp. NRC-1
b Hma
Haloarcula
marismortui
f Hvo
Haloferax
volcanii
g Hbo
Halogeometricum
borinquense
h Hmu
Halomicrobium
mukohataei
i Hut
Halorhabdus
utahensis
j Hla
Halorubrum
lacusprofundi
q Nph
Natronomonas
pharaonis
x Hwa
Haloquadratum
walsbyi

VNG0955

rrnAC1482

HVO_1203

Hbo0356

Hmu1924

Hut1377

- - -

Pairwise sequence scores
Consensus score1255 Hut1377 rrnAC1482 Hmu1924 VNG0955 HVO_1203 Hbo0356
784Hut1377 1271 756 655 452 491 461
912rrnAC1482 756 1237 930 452 546 541
822Hmu1924 655 930 1251 436 523 513
607VNG0955 452 452 436 1168 570 459
802HVO_1203 491 546 523 570 1379 778
760Hbo0356 461 541 513 459 778 2686

341 symbols
consensus       MTINPRDYDLDELRKMA----RARRG----------------------------------
#oth            .311.12..12...22.2222232232222211111111111111111111111111111
Hut1377         :S::::::::::::::::::::E:G:ATIPV:::::::::::::::::::::::::::::
rrnAC1482       ::::::::::::::::::::::Q:--::::::::::::::::::::::::::::::::::
Hmu1924         :::::::::::::::::::::KQQ:P::::::::::::::::::::::::::::::::::
VNG0955         ::L:::E::PE:::SA:::::::G--::::::::::::::::::::::::::::::::::
HVO_1203        :YLD:DE::P::::RI:RDAP::::N::::::::::::::::::::::::::::::::::
Hbo0356         :K:D:DN:::R:::RI:DERRTD:G:SDDTERRRDYDDGHRGHDDGHRGHDDGHRGHDDG

consensus       ------------------------------------------------------------
#oth            111111111111111111111111111111111111111111111111111111111111
Hut1377         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnAC1482       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
Hmu1924         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
VNG0955         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
HVO_1203        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
Hbo0356         HREYDDGHRSHDDDHRGRDGGHRSHDDGRRGRDDGRRSRDGSDRGDRNGRDNRGERRGRS

consensus       ------------------------------------GNGMG------------------D
#oth            111111111111111111111111111111111111.12431111111111111111112
Hut1377         :::::::::::::::::::::::::::::::::::::DDEE:::::::::::::::::::
rrnAC1482       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
Hmu1924         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
VNG0955         :::::::::::::::::::::::::::::::::::::DENI::::::::::::::::::R
HVO_1203        :::::::::::::::::::::::::::::::::::::D:RF:::::::::::::::::::
Hbo0356         RREDNLRRPREGYSDHAEAHDEVVRADQIANRFGLG:::T:GSDGRGRGYDELGYERSRE

consensus       E--------DTPDPFRLDNGLDDRDR-QLAGEALRSGQLRQLLPHES-AGGDGLEKPYLE
#oth            2222122213443233123334234313423213.241122..33324233234.1...4
Hut1377         G::::::::S::A:-D::A:GLSG:-:V:GDD:Y::QLY:::::L::M::::P-:::::H
rrnAC1482       ::::::::::V:::TD::M::::A:EEV:::SSF:::LY:E:::F--:LS::AQ::::::
Hmu1924         :::::::::E:L::AE:GMAM:EGGD:AP::DSF:A:LY:E:::F--:L:S::T:::::A
VNG0955         :::::::::-------:KER:KEHE-::TTE::V::A::K:::FMH:S:SVES::R::::
HVO_1203        DGRFDDGRF:DRG:::F::P:F::S:::E:S:::::S::EH::V:Q:RGEE::V:::::R
Hbo0356         DRSYDGYDFEEVGE::F::PVH::P::GR::::::NN::E:::I::TA:A:GS::::::S

consensus       SLPETYAAERVVFEWLEFLLEKSGFKRAMEALDYYESVDWITDDVQDDLSDYLLGFDESA
#oth            22.34.11.321.1..21.1222.221142.12..4312.213.1334.41112.21243
Hut1377         :::::::G:LI:::::SY::::A::RG:N::I:::VE:N::::::G:::D:::::L::RS
rrnAC1482       A::::::::F::::::::::MH::Y:G:D::::::R:I::L:E::::::::::::I::::
Hmu1924         A:::N::::F::::::::::MH::YQG:E:::::::DI::::::::SS:::::R:I:::G
VNG0955         TM:GQ::::ITL::::D::::RG:V:::LK:IE:::T:G:VSA:AAER:QGHVR::SGP:
HVO_1203        :::DK:G::::::D:::::VL::::::::D::R::QT:G:V:P::EET:R::::::SADV
Hbo0356         :V:KE::::::::D:::::VL:G::::T:D::R::H::::::E::ETE:H:::I::SGNV

consensus       DDD--TDLDVDDHLLSLVYIAKLASMA--------------
#oth            32331421321..3...11112.31.311111111111111
Hut1377         A:-::G::TI::::::::H:G:::::Q::::::::::::::
rrnAC1482       TN:D:NE:S::::M:::::::::TA:T::::::::::::::
Hmu1924         TN:G:AS::::::M:::::V:::H:::::::::::::::::
VNG0955         :::SHS::EMS::V:::::::R:S::Q::::::::::::::
HVO_1203        :EP::::::::::::::::V:R:S::V::::::::::::::
Hbo0356         S:T:::EF:::::H:::L:V:Q:::::DGVETKARSPSALR