|
Pairwise sequence scores | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
Consensus score | 3025 | hla1345 | Hbo0994 | Hmu1899 | rrnAC1378 | VNG1187 | pNG6067 | HVO_2153 | Hbo2450 | Hbo3445 |
1926 | hla1345 | 3427 | 1594 | 1800 | 1724 | 1742 | 1786 | 1832 | 1755 | 1776 |
1994 | Hbo0994 | 1594 | 3018 | 1890 | 1880 | 1858 | 1893 | 1906 | 1861 | 1878 |
2379 | Hmu1899 | 1800 | 1890 | 2936 | 2257 | 2161 | 2123 | 2237 | 2232 | 2195 |
2503 | rrnAC1378 | 1724 | 1880 | 2257 | 3058 | 2285 | 2180 | 2352 | 2305 | 2314 |
2576 | VNG1187 | 1742 | 1858 | 2161 | 2285 | 3012 | 2228 | 2348 | 2364 | 2413 |
2522 | pNG6067 | 1786 | 1893 | 2123 | 2180 | 2228 | 3074 | 2382 | 2385 | 2404 |
2669 | HVO_2153 | 1832 | 1906 | 2237 | 2352 | 2348 | 2382 | 3056 | 2422 | 2449 |
2657 | Hbo2450 | 1755 | 1861 | 2232 | 2305 | 2364 | 2385 | 2422 | 2988 | 2526 |
2687 | Hbo3445 | 1776 | 1878 | 2195 | 2314 | 2413 | 2404 | 2449 | 2526 | 3040 |
433 symbols consensus ---------------------------MRDRIGAPGTG-------ISRREFLAATGALGT #oth 1111111111111111111111111112345512224211111114...3.12.2245.4 hla1345 MPFGYINLTSIDGVLRVCVSATSLICQS:PCS:MTRD:DDTGRRIA:::G::S:AA:::: Hbo0994 ::::::::::::::::::::::::::::TNEV::::D::::::::::::K::::::ST:L Hmu1899 :::::::::::::::::::::::::::-----------:::::::M:::::V::::LS:S rrnAC1378 ::::::::::::::::::::::::::::E:Q:::::S::::::::::::D:VK:S:LG:: VNG1187 ::::::::::::::::::::::::::::T:Q:::::L::::::::::::D:V:::AGV:: pNG6067 ::::::::::::::::::::::::::::TT:F:::::::::::::L:::::::::::T:I HVO_2153 :::::::::::::::::::::::::::::NYV::::ST:::::::V::::::::::SV:A Hbo2450 :::::::::::::::::::::::::::----M:::::::::::::L::::::K:::VA:L Hbo3445 :::::::::::::::::::::::::::::::::::::::::::::L:::::::::SG::: consensus AALAGCTAPT--AG-EGAANTDTT------------TAA--SESSLPTTSPPEVVNVDEQ #oth 422...5124555715644735231111111111113553364431.1.21122122311 hla1345 VG::::G::RAD::::::E:AV:DETVQQQVEEWSGSDSTGV:TDH:Y:::RTTIDL::R Hbo0994 F:S:::LTSSTPTV:SQVDAAGS::::::::::::::Q:::VAGD::::GR::::DLG:R Hmu1899 L:::::Q:::SSSKVSTTSE:A:E:::::::::::::SMASQSE:::::::::I:::::: rrnAC1378 V::::::::GEVPT::ESVDAS::::::::::::::P:Q::::GD::::::::I:::::: VNG1187 ::I::::::D::--:G:ESV:::::::::::::::::::::KQ:G::::::::::DAT:: pNG6067 :S::::S:GG:::N::P::TS::A:::::::::::::QTQTDSPN::Y::::T::::::: HVO_2153 LG::::A:::NDD::NA:VG::E::::::::::::::V:QT::::::Y:::::::Q:::: Hbo2450 S:S::::::S:::E:QP::::Q:::::::::::::::::::AS::::::A::Q::D:ED: Hbo3445 ::::::Q:::NQ:S:AK::RPS::::::::::::::ANG::GD::::::::::::::::: consensus GGQVTLKTVPARHEVHPLDTMGGPVELPRVWAFQADDGDPSVPGPILRTTEGEDMEVTLD #oth 1151.3214322.521122111..221.4...1312.33....1.12.22..3431112. hla1345 D::I:VS:T:C::QLLGE::Q:::W:::E:::W:TP:T:::::::L::V:::TQL:I:Y: Hbo0994 DNH::::::S:V:H:::GE::N::IT::V:::W:::::T:::::::::IQ:::TFT:::: Hmu1899 ::E::IS::ASK:M:::EE:::::::::K:::::::::E::::::::::::::::::::: rrnAC1378 ::E:::SS:::K::A::GKS::::::::K::::K::::E:::::::::::::::::::F: VNG1187 :N:::::S:::V:D:::::S:::::K:::::::ATE::::::::::V::E::Q:I::::: pNG6067 ::G::MR:QQ:::A::::::::::::F::::::::::N::::::::::::::NA:::::: HVO_2153 :::::::SA::::AA:::E:::::::::Q::::S::::E:::::::::::::N::::::: Hbo2450 ::S:::::K::::::::::S::::::::K::::::::RP::::A:::::::::::::V:: Hbo3445 ::K:::::Q::V::A::::S:::::K:::::::::::R::::::::I::::::E:::::: consensus NTDGKRPHTVHFHGVRKAWEDDGVPTTTGITVDPGEKHTYTIPANVPGTHLYHCHYQTHR #oth .13341...3.1.14213.21........12171..21..112..12...2....1..21 hla1345 :SAHN::::F:V::LS:D:M:::::::::QQ:A:::EY::E:D::Q::::F:::::::QN Hbo0994 :SGMDM:::L:V::L::T::N:::::::::::EA::::::EFT:::A:::::::::::P: Hmu1899 :::ANM:::L:::::::T::N:::::::::::N:::::::E:::::::::::::::::Q: rrnAC1378 ::::M::::::::A:Q:Q::::::::::::RI::::::::::::::T::::::::::::: VNG1187 :::::::::L::::SQT:::::::::::::R:G:::::::::::::::::::::::::Q: pNG6067 ::::R::::I::::I::T::N:::::::::Q:P:::T:::E:::::::::F::::F:::: HVO_2153 ::::M::::::::::::::K::::::::::R::::::::::::::::::::::::::::: Hbo2450 ::Q::::::::::::Q:::K::::::::::::K:::::::::::::::::I::::F:::: Hbo3445 ::::::::::::::A::::K::::::::::::S::::::::::::::::::::::F:::: consensus HIDMGMYGIFRVDPKGYEPADKEYFMTVKDWDSRLNRQMAGE-DVTYSPRNRNPDVFTVN #oth .21...1..2.11.1...31.2.21..211..11123331.3113312423.51.2..1. hla1345 :L:::::::L::::E:::AP:::A:::I::::T::SAST::G:::DF:H:D::::A:::: Hbo0994 :M::::F::L::E:::::R:::::Y::::E::T::S::YG:Q::A::DIT::MM:T::I: Hmu1899 ::::::::::::::::::E::Q:L:::L:::::T::K::::M::A:::::D:D:::::I: rrnAC1378 :::::::::::::::::::::::::::L:E::::::Q::::M::AN:DV:::R::T:::: VNG1187 :::::::::::I:::::::::::::::::::::::::S:::::::D::::T::::::::: pNG6067 :::::::::Y::::E::::::R:::::I::::::VP:KW:::A:F::NSAS::::::::: HVO_2153 ::E::::::L:::::::::::R::::::R::::::P:::::::N:::D::D:K::::::: Hbo2450 :::::::::::::::::::::::::::L:E:::::::M::::::MS::::::::::::I: Hbo3445 :::::::::::::::::::::::::::::E:::::::M:::::::S::::::T::::::: consensus GKSAPRTLHPEDGSPIIVEQGDTVRIHLVNGGYMSHPMHIHNHRFQVVEKDGGTIPEAAR #oth .11..2.1...3...21.23..2..2.42.2.122.11.3...1.3211...141.2111 hla1345 :R:::Y:F:::Q:::L:::E::Q::::F::A::E::A::N:::G:T:::::::V:::::: Hbo0994 :::::A:F:::T::::::DP:::::V:W::A:FH:::::L:::::K::::::SA:::QMQ Hmu1899 :::::::::::::::V::S:::::::::T:N::::::::T:::::R::::::SKV::::Q rrnAC1378 :::::::::::::::::::::::::::MC:N:::D::::::::::::TH::::K:::::: VNG1187 :::::::::::::::::::::::::L::::::::N::L:::::::RM::::::Q::A::Q pNG6067 :::::::::::E::::::DE::S:::::::::::::::::::::::R::::::::::::: HVO_2153 :::::::::::::::::::::::::V:Y::A::::::::::::::::::::::VV::::: Hbo2450 ::::::::::::::::::S::::::L::::::::::::::::::::R:::::::V:K::: Hbo3445 ::V::::::::::::LV::H::S::V:F:::::::::L::::::::R:::::::V::::: consensus HDMDVTNIAPAERHTIEFTADADPGIYLMHCHKVNHVMNGNFYPGGMLSGVVYKEAMDTD #oth 242.12321..1.211..3.111..1.12.....3.11..43.....2212..331.111 hla1345 :RE::IP::::::K:::::::::::V:AL:::::::A:::DS:::::IG:M::ES:::SE Hbo0994 LLQ::V:::::::Y:V::::::::::::::::::D::R::SS:::::::A:::TPV:::: Hmu1899 YEQ:IV:V:::::KA:::D:::::::::::::::S:A::::T:::::VG:I::E::::S: rrnAC1378 ::Q:I:S:P::G::::::E:::::::::A:::::S:A:::TA:::::IT::::::::::: VNG1187 :T::I:DM::::::::::Q:::::::::::::::::::::T:::::::::I:::D:::S: pNG6067 :::::::V::::::::::::::::::::::::::::::::T:::::::T::::RSV:::: HVO_2153 ::::::::::::::::::::::Q:::::::::::::::::G::::::::::::::::::: Hbo2450 ::::::::::::::::::::NS:::::::::::::::::::::::::::::::E:::::: Hbo3445 :E:::::V:::::::V::::::::::::::::::E:::::::::::::T::::::::N:: consensus IFAQLMDYAGYEA #oth 2.441.32...34 hla1345 Q::SV:EM::::: Hbo0994 L:K:V:A:::::V Hmu1899 :::E::::::::G rrnAC1378 ::K:::::::::: VNG1187 ::GK:::F:::D: pNG6067 ::N:::E::::ST HVO_2153 :::S::E:::::G Hbo2450 :::T:::::::KG Hbo3445 ::D:::Q:::::Q