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[K] (RpoC) COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit
6 genomes BUD1406 6 proteins
a Hsa
Halobacterium
sp. NRC-1
b Hma
Haloarcula
marismortui
f Hvo
Haloferax
volcanii
g Hbo
Halogeometricum
borinquense
h Hmu
Halomicrobium
mukohataei
i Hut
Halorhabdus
utahensis
j Hla
Halorubrum
lacusprofundi
q Nph
Natronomonas
pharaonis
x Hwa
Haloquadratum
walsbyi

VNG2662

rrnAC2427

HVO_0350

Hbo1131

Hmu0147

-

hla0418

- -

Pairwise sequence scores
Consensus score2919 VNG2662 HVO_0350 Hbo1131 hla0418 rrnAC2427 Hmu0147
2476VNG2662 2921 2312 2322 2237 2359 2321
2521HVO_0350 2312 3088 2558 2280 2318 2274
2639Hbo1131 2322 2558 3078 2365 2424 2411
2529hla0418 2237 2280 2365 2995 2409 2375
2644rrnAC2427 2359 2318 2424 2409 2912 2546
2588Hmu0147 2321 2274 2411 2375 2546 2913

427 symbols
consensus       ------MTEYD-VTDDIEAVVEDTELPRRLKDEVYSTI----EER-GVTVDQADEIAQAV
#oth            111111113322.222221211221111...12114111111..122.2322.33..21.
VNG2662         :::::::::F:::::GVHD:I:::::::::::::LA:A:::::::::::KS::N:::T::
HVO_0350        MTDTDATAD:EF:D:A:VD:::SK::S:::::RI:Q:::::::::E:::L:::G::::::
Hbo1131         ::::::::::EH::E:V::L:::RDI:::::IRI:D:::::::::E::SPS:::::::::
hla0418         :::::::::::H::::M::::GA::::A:::::::EA:NRKA::TGE:::E::TD::TG:
rrnAC2427       ::::::::AH:::SA:::::::::::::::::::::::::::::::::G::D::R::K::
Hmu0147         ::::::::RAN::::::::I::::D:::::::D:::::::::::::D:::EE::Q::K::

consensus       EARYLDTRVDPLDPVGTVSAQSIGEPGTQMTMNTFHYAGVAEIDVTQGLPRLIELVDARK
#oth            131.21....................................1.................
VNG2662         ::Q:::::::::::::::::::::::::::::::::::::::M:::::::::::::::::
HVO_0350        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
Hbo1131         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
hla0418         :N::IE::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnAC2427       :T::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
Hmu0147         QS::QE::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       TPDTPMMTVHLEDEYATDRERAHEVVWKIEATRILALGDISTNVADMLVRIDLNEDTLLE
#oth            .....1.1.2.12..122..2..1...21.1.1......1.......1.211..11..2.
VNG2662         :::::V:E:Y::::::EE::::::::::::::K::::::::::::::V::::::::::Q:
HVO_0350        :::::::::Y::::::NN::L::Q:::N::S:K::::::::::::::V:QVN::DE::::
Hbo1131         :::::::::F::G::::E:::::::::SM:::K::::::V:::::::V::::::::::M:
hla0418         :::::::::::D:::G::::K::::::S:::::::::::V::::::::::::::D:::::
rrnAC2427       :::::::::::DE::::::::::::::::::::::::::::::::::::E::::::::::
Hmu0147         ::::::::::::::::::::K::::::::::::::::::::::::::::Q:::::E::M:

consensus       RWPTVDDTDAVAEEIAETIEDALGVKTRQAGTLIEFGPEEPSYRRLLQLVEELRDIVFKG
#oth            ...12233451.411.....23.1141113..32....21....2......2..11....
VNG2662         :::R::S:TQI:G:V:::::GN:::TVT:D::IL::::S:::::E::::::Q::::::::
HVO_0350        ::::Y::EGV::S:::::::::::I:::RE:::::::::S::::::::::::::::::::
Hbo1131         :::::NNV:T::Q:::::::::::::::RS::VV:::::S::::::::::::::::::::
hla0418         ::::HS:PSK::AI:::::::S:::N:::S::VV::::N:::::E::::::R::E:::::
rrnAC2427       :::::N::::I:::::::::SN:::S::::::::::::::::::D:::::::::E:::::
Hmu0147         ::::::QVED::::::::::SK:A:Q::::::M:::::::::::D:::::::::EV::::

consensus       IEEISRVVIRKEETD--GGEEFVLYTEGSAFGDALDIEGVDASRTTCNNIHEIHRNLGIE
#oth            ..112.....1.1211142..........1.121.4...1..1..11.....1113..1.
VNG2662         :::V::::::R:::E::R:::::::::::::KK::K::::::T::S::::::V:KT::::
HVO_0350        :::V::::::::NNEDTDE::::::::::::::::A::::::::::S:::::V:KQ::::
Hbo1131         ::D:T::::::::N:DT:E::::::::::::::V:S::::::::::S:::::::::::::
hla0418         ::::E::::::::I::::D::::::::::::::::::::::::::::::::::Y::::V:
rrnAC2427       ::::T::::::::::::N:::::::::::D::EV:::::::::::::::::::Y:E::V:
Hmu0147         ::D::::::::::::::E:::::::::::::::V:G:::I:::::::::::::Y::::::

consensus       AAREAIINETMNTLEEQGLDDVNIRHLMLVADIMTNRGEIESIGRHGISGSKDSVLARAA
#oth            ....11.1..12..1........1........1..13.1.1.........1.2.......
VNG2662         :::::::::::T::::::::::::::::::::::::D:T:::::::::::N:N:::::::
HVO_0350        :::::::D::::::R:::::::::::::::::::::D:T:::::::::::::::::::::
Hbo1131         :::::::D::::::R::::::::V::::::::::::::::::::::::::::::::::::
hla0418         ::::T::D::K::::::::::::V::::::::M::TN:::D:::::::::::::::::::
rrnAC2427       ::::TL:::::::::::::::::V::::::::::::E:T:::::::::::::::::::::
Hmu0147         ::::TL:::::H::::::::::::::::::::::::::::::::::::::N:E:::::::

consensus       FEVTVNHLLDAAIHGEEDDLDGVIENVIVGKPIALGTGDVDLRMGS--------------
#oth            1...............3.2.1..1....1...141.....1....244211111222221
VNG2662         ::::::::::::::::S:::::::::::::::VR:::::::::::ATQ::::::::::::
HVO_0350        ::::::::::::::::::::::::::::::::::I:::::::::::LDV::::EDADANA
Hbo1131         ::::::::::::::::::::::::::::::::::I:::::::::::IEASTETEPETDAA
hla0418         ::::::::::::::::Y:E:::::::::A::::S::::::::::::RVV:::::::::::
rrnAC2427       ::::::::::::::::V:E::::T:::::::::K::::::N::::T::::::::::::::
Hmu0147         Y:::::::::::::::V:V:E:::::::::::VQ:::::::::::A::::::::::::::

consensus       ----SDD
#oth            111122.
VNG2662         ::::TS:
HVO_0350        APEP:::
Hbo1131         APEP:::
hla0418         ::::G::
rrnAC2427       ::::TQ:
Hmu0147         :::::Q: