6 genomes BUD1417 9 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC0579 rrnAC3493 HVO_2003 Hbo1876 Hbo2337 Hmu1045 Hut0461 Hut2232 hla1757 - -

Pairwise sequence scores
Consensus score	697	Hut2232	Hbo2337	rrnAC3493	Hmu1045	hla1757	HVO_2003	Hbo1876	rrnAC0579	Hut0461
352	Hut2232	674	382	364	344	177	165	193	243	169
398	Hbo2337	382	704	471	489	218	239	214	282	221
395	rrnAC3493	364	471	710	585	184	205	202	229	191
400	Hmu1045	344	489	585	700	182	206	211	252	215
433	hla1757	177	218	184	182	790	502	545	284	302
391	HVO_2003	165	239	205	206	502	727	538	250	258
430	Hbo1876	193	214	202	211	545	538	759	327	315
426	rrnAC0579	243	282	229	252	284	250	327	672	429
421	Hut0461	169	221	191	215	302	258	315	429	689

104 symbols
consensus       --MSLLIDAARILAGLNVLLLLALIAVWARNYREFRSKLTLGLIVFAVFLLAENALALYF
#oth            111554342.332222.122.33.631.322.321.24343.133.123112..23.223
Hut2232         :::NT:LT::SV:S:::I::::V:GGI::Q::::::TP:::::LG::AV:II::LV::S:
Hbo2337         MA:ETT:Q::SA:::V:I:::V::T:::VN:::T::TP:I:::VA:GAAM::::::::::
rrnAC3493       MA:GP::T::A::G::::::::P:LG::V:::AT::TG:VA:::A:::AM:::::I:V::
Hmu1045         MA:GP::K::SA::A::::I::P::GI:I:::ST::TN:VG::V::::AM:::::V:V::
hla1757         ::::FWF:V:::S:::::V:::::VW::G:::AQ::::HA:::AM:G::::G::LF:::I
HVO_2003        ::----V:V:TVSS:V::VV::::S:::::::LT::::HAV::L::G::::::::::F:M
Hbo1876         ::::IWF:V::VASA:::::::G:AS::::::L:I:::YP:::L::::L::::::::::I
rrnAC0579       :::::VLNG:::A:AV:I:::GV::SI:VQT:::I:AP::::S::::S:::::::V::::
Hut0461         :::T:VL:V::LA:VT:II::S::::::GQL:::I::TF:::S:::::::::::V:::WY

consensus       YFSMDPLLAG------PPIAQQAMMVLRVLQTLAIAFLTYITWD
#oth            1252525233113211233123411212311331243.423133
Hut2232         F:::GM:Y::::::::SES::L:VLAM:G::FV:VS:::V:SLR
Hbo2337         F:T:QS:YS:::::::D:HV:::VLA::S::LI:LG::::V:VQ
rrnAC3493       F:::QSFY::::::::D:HV:::VL:::S::FV:::G:S:T:LR
Hmu1045         F:::SS:Y::::::::D:HV:::VL:::S::FV:::V:S:V:VQ
hla1757         :LI-::M:SLWFASDV:A::WRG::A:H:::::GLL::VW::::
HVO_2003        :IL-::T:S:WFSTDV:V::WRL::L:H:FE:AGLV::AW::F:
Hbo1876         :LV-::T:RDWFTTDV:A::WR:::L:H::E::GLL::AW::F:
rrnAC0579       ::T-A:AM--:::::::A::V:V::::QM:E:IG:GV:::F::K
Hut0461         ::NPT:G:--::::::::F:VEI::::Q::EA::::T:L::::Q