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6 genomes BUD1452 11 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi

VNG0861

rrnAC1528

rrnAC3394

rrnB0323

HVO_0938

Hbo1572

Hmu2083

Hmu2205

 - -

NP1284A

NP1290A

NP3146A

 -

Pairwise sequence scores
Consensus score1041 NP1290A rrnAC1528 Hmu2083 VNG0861 HVO_0938 rrnAC3394 Hmu2205 NP1284A NP3146A rrnB0323 Hbo1572
422NP1290A 979 249 196 191 264 315 306 302 318 291 288
503rrnAC1528 249 1024 631 172 306 397 392 339 333 345 343
501Hmu2083 196 631 1041 234 315 354 355 344 378 398 366
401VNG0861 191 172 234 737 240 313 266 277 274 322 320
577HVO_0938 264 306 315 240 1192 446 460 436 494 504 504
678rrnAC3394 315 397 354 313 446 1325 778 476 447 488 532
648Hmu2205 306 392 355 266 460 778 1103 392 437 422 479
604NP1284A 302 339 344 277 436 476 392 1056 527 502 531
682NP3146A 318 333 378 274 494 447 437 527 1247 749 722
692rrnB0323 291 345 398 322 504 488 422 502 749 1257 848
724Hbo1572 288 343 366 320 504 532 479 531 722 848 1276 

200 symbols
consensus       ---------------------------MTLLVPFDGSALAEAALERAVEFATVLDEDVLA
#oth            111111111111111111111111111143212211263262125115435655355332
NP1290A         :::::::::::::::::::::::::::::FV:A:::::DS:::::::ADAVDS-:DRL:V
rrnAC1528       ::::::::::::::::::::::::::::VF:::::::P::D:::N:::TY:KA:::::V:
Hmu2083         ::::::::::::::::::::::::::::VF:::Y:::SP:R::::::::YG:P::R::V:
VNG0861         :::::::::::::::::::::::::::---------------------------------
HVO_0938        :::::::::::::::::::::::::::-MY::AY:::R::N:::D::AQ::SATGH::::
rrnAC3394       MCRHCHFLSAIAPVSGTNKSQPGNKWD:V::::::::::SK:::T::M:::DYR:::IT:
Hmu2205         ::::::::::::::::::::::::::::::::::::::::R:::::::::SEYTGQ::V:
NP1284A         ::::::::::::::::::::::::::::::V::Y:::::::::ID::EQ:RSSV::EIVV
NP3146A         ::::::::::::::::::::::::::::IFV:::::TS:::T::V:::::S:::::Q:::
rrnB0323        ::::::::::::::::::::::::::::::V::::::E::::::V::A::G::FE:::::
Hbo1572         :::::::::::::::::::::::::::::::::::::V::A:::V::T::GR:F:QN:::

consensus       VSVIPDDNA-YARERGWIDADEAFDRETVADDLHEQVVEAAPAADFRYEVVGRYAP----
#oth            23422545422.333322555261364222563335344531434224442443251122
NP1290A         :::L:G:DR:L:DAY:FL-:NGTY:P:Q::A::ETA::A::::::::T:QL:P::G::::
rrnAC1528       :AF::TGAD:::ER:RRV:PT:D:AA::A::::RRKIE::TDDSEL::DD:SAHS-::::
Hmu2083         ::Y::TG:S:::ER:Q:V:P:DE:PF:::TQ::ERKIE::TDDTEL::TD:SAHS:::::
VNG0861         ---------:M::D:::LG:::S::VG:::AAIAAD:H:I::GVPVE:::LDA:::::::
HVO_0938        :A:::::S::::V:A::VPSR:V::QQ::VGE:::TA:DI::S:S:QAVT:::DPA::::
rrnAC3394       L::::::A::::::H::L::::::TV:A:::RMR::AESV::::S:::::PEDVSSMAST
Hmu2205         L::::::AD:::V::::::EG:SY:PAA:::RFER::T:I::::T::V:RPADVSSMADV
NP1284A         :T:::NNES::::::::LQD::::TLNA:VST:R:RT:ASRDGVS:::VT:::::A::::
NP3146A         :TA::RG::E:::::::::EE:P:::QQIVTT::::::NL::E::::HAT::K:::::::
rrnB0323        ::::RNG::K::::HD::GPN:D::L:A:VTS:::::IDLC:SS:::HT::D::::::::
Hbo1572         ::::::R::E::::::::ET::P::::::VSK:::::T:CC:SS:::H:::D:::T::::

consensus       TGTIARTIRELARDVDASVVFIGSENAGRVVTPI-SVGGKVAADDAYDVHIVRH------
#oth            4363365214437244143312..11213224325111462453451.132.15552442
NP1290A         KQR::TV:AAV::EA::DA:YL::D:::::LDSL:-----:DGTAD:::RL:CS::::::
rrnAC1528       :SELST:::QT::::::N:::L::DDTEDI:V:::---:E:TDGED:::::::RT:::::
Hmu2083         A:GSSEEV:QT:S::::T:L:V::DDEES::V:V:----GDGT:EE::::V::G::::::
VNG0861         R:RVS::V::::V:AG:T:::V::D:::H::GGLT:::QG:S:::R:::::::-::::::
HVO_0938        P:N:VAEL:TGRVET::T:I:V:::::::::V:LV::::N::S::DH:::::::APPE::
rrnAC3394       :TN:T:::::V:HEEE::I:::::::::::S::VC:::SP:SE:PE::::::::P:::::
Hmu2205         :TDVV:::::VSH:IE::I:::::::::::S::VC:::APISE:PT::::::::AG::::
NP1284A         :::::SR::TEIQR:G:E::::::D:::::::S:A:::S::::E::::IF:::RPSEAA:
NP3146A         P::::TR::::STE:SP:MF:::::::::::STVS:::A:::SEKN:::V:::NHAPTRV
rrnB0323        A:AV:KA::K::KRE:::M:::::::::HL::S:S::::SI:S::::::V::::RNPSKI
Hbo1572         P::::NCL:KT:EREQ::M:::::::::HI::T:T:::S:::::E::::V::::RSPSEI

consensus       --------------------
#oth            32123333214311212321
NP1290A         ::::::::::::::::::::
rrnAC1528       ::::::::::::::::::::
Hmu2083         ::::::::::::::::::::
VNG0861         ::::::::::::::::::::
HVO_0938        ::::::IHRRFPKSHFYLP:
rrnAC3394       ::::::::::::::::::::
Hmu2205         ::::::::::::::::::::
NP1284A         ::::::::::::::::::::
NP3146A         EKLRQSSPHRSSKSDFYQD:
rrnB0323        AKLRNTSPHRQSKSDFYLPE
Hbo1572         STLSDANDHRTRKSDFHFPE