|
Pairwise sequence scores | |||||||
---|---|---|---|---|---|---|---|
Consensus score | 4862 | hla1655 | Hmu0290 | rrnAC2446 | VNG1372 | Hut1186 | NP0608A |
2425 | hla1655 | 4574 | 1498 | 1289 | 805 | 1435 | 1048 |
2916 | Hmu0290 | 1498 | 5412 | 2345 | 980 | 1774 | 1240 |
2888 | rrnAC2446 | 1289 | 2345 | 5745 | 1086 | 1670 | 1189 |
1661 | VNG1372 | 805 | 980 | 1086 | 3645 | 1030 | 1020 |
2738 | Hut1186 | 1435 | 1774 | 1670 | 1030 | 6579 | 1353 |
2242 | NP0608A | 1048 | 1240 | 1189 | 1020 | 1353 | 4287 |
1002 symbols consensus --MVRRAVVAPALVAVVLTGSIA--PVAPTADGAAAARASDTAAA--------------- #oth 233441522233342322424322233342234522553333353111111111111111 hla1655 VPPTVTPTSR:-------:::FR::---::TP:PTNRSG:G::I-::::::::::::::: Hmu0290 MGE:T:G:::V-::V:::S:::::::AITV::SS:VETTV::DVP::::::::::::::: rrnAC2446 MFG:P:R:::VG::VLL:G:G::SL:::A:::HG:VTG:::G:::GVGENCTYKAETASG VNG1372 :::G:T:AIRL:GI:::V:AAVV::ASQ:AVFEHT:D:GA:RTPP::::::::::::::: Hut1186 :::HS:Q:I:A:IL:A:VI:TF:GVG::GAVA:ED::M:TT:WEN::::::::::::::: NP0608A :::E::H::V:L:S::::LFVL:::--:F:TPA:::SIDVENTL:::::::::::::::: consensus -------------A---------------------------------------------- #oth 111111111111112233322233331122221112121111111211111111211222 hla1655 :::::::::::::-:::::::::::::::::::::::::::::::::::::::::::::: Hmu0290 ::::::::::::::SADRSGSPPKQLSAGVGQ:::FGLGVGDTAGS::::::::DTGQQD rrnAC2446 QRGPAVETVQSPT:TTESNGSLVRIRSADMHRRQPRGQG:GDTAGTAAPAAASMETGTAT VNG1372 ::::::::::::::TANGAATPHSET:::::::::::::::::::::::::::::::::: Hut1186 :::::::::::::-:::::::::::::::::::::::::::::::::::::::::::::: NP0608A :::::::::::::-:::::::::::::::::::::::::::::::::::::::::::::: consensus -----------I--TQ-Y-R-PDEPGR-IAVTVTYSVPDRVTELEVALPAGATRTSADGF #oth 212111111113442243434123125124234223313433333442.54313243411 hla1655 :::::::::::-::--:-:-::PT:--:------------------R::TPS:::T---- Hmu0290 DGT::::::::LGL::RFQ:L:ER::T:VR:RL:::::A::VSMRA:::D:::FV:RQ:: rrnAC2446 SGATQTKDGDV:QQ::T:A:V:E:::E:V::::A:E:::::VD::THV::A::V:GT::: VNG1372 ::::::::::::HKSVVLSKT::::::::DA::::DI::S::::S:SP:NRT::V::S:: Hut1186 :::::::::::VTI::E:RLQ:::::Q::E::A:V:F::IA::F:M:V:WQG:V:DT::: NP0608A :::::::::::-::--:-:-:Q:DRDDY:::ETAV:::ENTA::::T::E::VPER:V:: consensus ERTNDR-YEWTGETDEPTITYRLRANQTA--QRTGPEASSGRALYVDTGEWALVRRP--- #oth 444434422133333421342334323231143322333422323222231.23332111 hla1655 ------:--------------:::KRDRL::RP:A:T:::T::SGRSSEPP:SAP:G::: Hmu0290 A:D:ETHFR:RAT:QQ::L::DY:I:E:I::D::::Q::D:::::AG::::::FE::::: rrnAC2446 ::V:ESV:::EET::TA::S::INP:::I::EKS:::G:E::Y:S::::::::LT:S::: VNG1372 DPST:G::::::RQ:A::LRITVT:::S:AAPPNDERHQA:EYSF::A:D::::TV:::: Hut1186 :S:VG:R::::::M::A::::D:D::E:::::G::::PG:::F::A:::A:::::P:DLE NP0608A SQ:D::TF::::::T:::VE:AYE:TVRE::::G:H:G----LF:::AD:::I::T:::: consensus LTPTSWRATDAD--PVRVDRESRVAGPGAAGEEIAYLGPHEEHTRTAHGQTFRLVVPEAA #oth 4232222332431142443144321.1.12144211..12233211.11.223.21.211 hla1655 R::G:T:G----::Q::L:::TVA::E:V:SQSM:F:::::::V:E:A::QY::I::D:: Hmu0290 P:::Y:E::GGT:::IVF::G:ST::::::::WLV:::E::L:E::::::R::::::A:: rrnAC2446 ::::R::Y:GQ::::::YN:TL:T::::::::::V:::EVATFEE:::D:::T:A:::RS VNG1372 TVR::::WS:::DVS:S:SESVS:D::::T:G:::::::VI:R::::::::IT::T::R: Hut1186 FISGRFD:::N::VD:GI::RRT:::E::V:DLL:F:::::TY:::::::::E::::::: NP0608A :IGL:::GP::E::---:V:::::D:::V:SSHM:::::Y:Q:::::A::Q:S::::A:: consensus DLTASPDAILDALANASDALRVGDRDETVFAIAAPTGAVEWGVRGLQTGDA-DMWVRDRE #oth 42312.4211223221131.21.3.114.2331..235231113.2131221.2..3241 hla1655 :PV::::EVFG:FE:::T::Q::A:::::V:FV::::E:S:A:::::::::::L::::G: Hmu0290 T:SEP:S:::::::DS::::::::::::::L::::::S:::::::V::::T::A::::A: rrnAC2446 AM::::ISV::SM::::N:::::::::Q::VV:::S:::::::E:Y:I::::::::QS:Q VNG1372 G:VEP:A::::TVTA:AGR:Q::G::DH:WLL:::RAP-LL:P::VEY:GS::A::GAD: Hut1186 S:::E:::V:A:F:::::::::::::DR::TV::::SV-D:A:L::::W:S:::::EAT: NP0608A ::RE::E::::S:TA::GR:DI:S:N:N::::::::EFH:::PA:::R:P:G:::::::: consensus PLDTADNVWLHEYVHTRQAYNT-----TAETRWTIEASATYYAALLSLEQGAIDFDAFRR #oth 22311422.2.....1..12421111114322.32.13.311..2121242433213.12 hla1655 :AG::AD::T::::::::::R::::::E:SGQ:IT:::::H::::FA:DR::A:::::E: Hmu0290 T::QP::A:::::::::::FTP::::::SR:A:FT::::S::::::::::ESVA:E:::D rrnAC2446 T::::N:::::::::S::::E:::::::Q:::::V:GW::::::V:T:::NR:G::E::E VNG1372 R:N::T::::::::::::::D::::::::SA::::::T:Q::::::::RLN:TTN::::: Hut1186 :IE::::T:::::::S::QL::::::::N::Q:L:::T:::H::E:A:DG:LT:::G:EE NP0608A :::::RSA:V:::::::::F:DAPDRH:DA::::V:GM:D:::::::Y:A:D::AET::D consensus RLARGARDPYRDVVLSNPATWEG-NADYDKGALVAGELDRRLRAATDRAATLQAVFRELN #oth 2113.342324212.33341.331412.21.2..3.32.122.41122532233.2331. hla1655 T::::E:E:DASA:::::T::D::H:::T::::::::I:::::::::G::S:AT:L:::: Hmu0290 :::::THPV:DG:::::VS:::::AP:::R:S:::::::::::V::::ER:::D::::M: rrnAC2446 Q::V:G:PV:S::T:TDR:S:TS:::N:R:::::::RA:VHI:S::G:NQ:::S::QS:: VNG1372 TI:K::DE:W:SA:::T:E::AV:G:N:R:::::W:A::::V:G::::T:DG:::L:R:: Hut1186 :::::TI:R::::::AEQ:::TD:L:E::::G::I:::::QI:L::N:SQ:FET::GD:: NP0608A ::EH::G:E:T::Q:VD:D::::T:::::R::::F:HI::::::ES:--T::N::VASM: consensus D-DDPVTNEDFLDAVEAAGGE--------DVRAEAERYTETTATPSTWNRTTHAAAFGDT #oth 24441222432134113213411111111322332413111312222.323313131243 hla1655 EA:E::::DRL::T::::AA:GADDATAAEI:D::::L:T:R::TE::D:D:::::::E: Hmu0290 GQQR::SQL:::ELLATT::T::::::::S:LD:GQT::::::SVE:::::::::V::QL rrnAC2446 GYR::::QSQ::TE:::::::::::::::T::NTTATE::::::VTM::G:::RQL::MI VNG1372 :REQ::S:A:VVA::A:::DD:::::::::AA:ATK:D:TSPTA::M:PP:ARP:PL-:S Hut1186 :::TTIEH:QL:ERL:SVANG::::::::T:ASTGD::LTSD::::::T:AQ:E::::S: NP0608A ::A::L:H:A::::::E:::S:::::::::I::D:::::::::A::V:D:GE:::::S:: consensus PARVGYELA----ADGYRATGPY------------------------------------- #oth ..3321212222232321232311111111111111111111111111111111111111 hla1655 ::Q:::G::::::D::V::::E:::::::::::::::::::::::::::::::::::::: Hmu0290 ::::::::PPAGD:::::I::::::::::::::::::::::::::::::::::::::::: rrnAC2446 :::I::G:PPVDR::A:::DSL:::::::::::::::::::::::::::::::::::::: VNG1372 ::-------::::----------::::::::::::::::::::::::::::::::::::: Hut1186 ::AFT::::SA::SAS::IE:::RNVSTDDIDRLAAGETLVVPVTVTNIGGSAGTYDIAL NP0608A ::-------::::----------::::::::::::::::::::::::::::::::::::: consensus ------------------------------------------------------------ #oth 111111111111111111111111111111111111111111111111111111111111 hla1655 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu0290 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC2446 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: VNG1372 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hut1186 SVEETVVARATGTLDGNESTTISLPHTFEQPGTYSVNIGASRTTIQVSDPGSAVVESIAV NP0608A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: consensus ------------------------------------------------------------ #oth 111111111111111111111111111111111111111111111111111111111111 hla1655 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu0290 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC2446 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: VNG1372 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hut1186 DRATLDAPGTVTLSATVRNRQDFPATASVSFTQNGATIGDGSVSLAPNESRTVTRSVTLS NP0608A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: consensus -----------RNSTVVG--DPIR---------------------------LVVGEALTV #oth 111111111112441143113143111111111111111111111111111222215343 hla1655 :::::::::::::R::AR::::VE::::::::::::::::::::::::::::::::S:EA Hmu0290 :::::::::::::E::TD:::T:Q:::::::::::::::::::::::::::::T::R::: rrnAC2446 ::::::::::::PNAP::GSE::::::::::::::::::::::::::::::::TN:T:A: VNG1372 :::::::::::-G::PI:::Q:A::::::::::::::::::::::::::::--------- Hut1186 EAGRYELGVNG:TT:::V::::P:FTYAVDETTEITVDGEYRTLSTTEVPP::::::VRI NP0608A :::::::::::YV:A:SV::T:ET:::::::::::::::::::::::::::AE:::PI:: consensus DAVVENAGGAAGEYNVSLSVDGEPVAARQGALAAGESTTATLEHRFADPGEYAVSVDDER #oth 434232322532423333422231245531422222412344312155214152432344 hla1655 AV:AS:T:::T:S:DL::::::::::N:S:::D::AE:IERF::::GST:::E:RIGS:: Hmu0290 :TL:S::::T::V::::MR:N:TV:DETS:RIE:::::::P:S:::PT::T:H:V::G:: rrnAC2446 :::::::::E::A:::T:A:NETV:::K::QIEP::R:EVEVT:T:::::R::I:::GDT VNG1372 ----------------------G:LPPLN::::PVAT::::AH::--------------- Hut1186 PVA:T:D::LT:::TAN::I::DVATRS::E::::::::V::::::RQ::S:RI::G:MQ NP0608A S:T::S-TANGV:HT:TFT:::::AGTETVTVDGATNA:GVI:--:DE::::T:GA::IS consensus TTVTVTDPARA-VR-LD-DP--V-QGD-VVVTATVGNDAPVPAAGEIEFRRDGTTVAER- #oth 431314322324134234324434323413311123123331253234243334333454 hla1655 L::::SE:::PL::GVST:RDR:PA:ES::A::::::::S:::G::::::VGSG:::TVP Hmu0290 IN:::QR:V::N:VS::VE:TTAQ:::T::L:::LY:GE:R:GEATVV:T::SEE:GR:H rrnAC2446 V::V::E::A:S:TNVTAS:KE:R:::K:D:::::A::NGI:GTITV::::SDVVF::QR VNG1372 -----------:--:--:--::-:---:-------------------------------: Hut1186 :V:Q:R:::TPV::R::L::PARSEPGN:T:::::::G:::::::::R:I::::::GVES NP0608A :::::::E---:--:--:--::-:---:-------------::N::GAASD:::VTP:T: consensus V-LPA-TTTTIEREVTLDRPG---------TVSLGAG------SV-V-VRDAAPAEATST #oth 242334332223222322311111111111232232222223423414215553534232 hla1655 :R:D:G:E::::::::F:G-::::::::::AGP::V::::::R:KN:T::VVG:VDEA:: Hmu0290 :TM::YNR:S::::IS:P::::::::::::::::::::::TVP::E:M::PNRVRTM:A: rrnAC2446 LY::PQ::::VT:T::::K:::::::::::::::S::DGQTTTA:D:V:-STETS:P::: VNG1372 -:---:---------------:::::::::-------::::::--:-:------------ Hut1186 :S:AVNE:L:VSKT:A:P:::QYRIRVDNV:A:VEVEPTADAA:DT:ED::SST:T:A:E NP0608A -:---:---------------:::::::::-------::::::--:-:--T:::D:::P: consensus PTTTADATQPTAGAGPGFGALVAALAVLVA--AL-ARRR--- #oth 444453345443443312333335233343112343231321 hla1655 TVAVESERPLS:DGA::::PA::LVS:I::SA::AR:G:RGT Hmu0290 A:P::T::SRGD:::::VV:::V::S::WV:::::-:::LG: rrnAC2446 ::EILTE::T:::E:N::T:::TG::M:L:::::I::Q:SS: VNG1372 ------------------------------::--:----::: Hut1186 VS:AT::AE:::A:::::T:VT:F:V:V::::VFGFT::::: NP0608A :G::D:GSL:MPESQS:::VVA:V::L:AG::VVS:::::::