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[R] (-) COG5524 Bacteriorhodopsin
6 genomes BUD1512 6 proteins
a Hsa
Halobacterium
sp. NRC-1
b Hma
Haloarcula
marismortui
f Hvo
Haloferax
volcanii
g Hbo
Halogeometricum
borinquense
h Hmu
Halomicrobium
mukohataei
i Hut
Halorhabdus
utahensis
j Hla
Halorubrum
lacusprofundi
q Nph
Natronomonas
pharaonis
x Hwa
Haloquadratum
walsbyi

VNG1764

rrnAC0014

- -

Hmu1181

Hut1141

hla0434

NP4834A

-

Pairwise sequence scores
Consensus score1735 Hut1141 rrnAC0014 Hmu1181 NP4834A VNG1764 hla0434
965Hut1141 1734 814 788 636 456 564
1158rrnAC0014 814 1713 969 681 599 595
1131Hmu1181 788 969 1810 694 579 545
990NP4834A 636 681 694 1777 663 653
928VNG1764 456 599 579 663 1779 863
899hla0434 564 595 545 653 863 1880

257 symbols
consensus       --MVGITTWFTLGALGMLAGTALLAYGFRLVPSER----RRYYLTLVGITGIAAVAYALM
#oth            123342221111.321122.13422224444223311112321231231212.23..34.
Hut1141         MIE::::L:::::T:::AL:SVG:::::VTLS:D:::::H:E:ADV:VV:L::T:::G::
rrnAC0014       :::AT::::::::L::E:L:::V::::YT:::E:T:::::KR::L:IA:P:::I::::::
Hmu1181         ::--M:EL:::::TI:::::::I:::::::::A:::::::TR:AV::S:P:::IF:::I:
NP4834A         :::::L::L:W:::I:::V::LAF:WAG:DAG:GE::::::::V:::::S::::::::V:
VNG1764         ::-MAL::::WV::V::::::V:PIRDCIRH::H-:::::::D:V:A::::L::I::TT:
hla0434         :ML:DTSV:AW::V:A:G:::I:PLWAWFSRS::TGESHAV:::::A:V::V::L::FA:

consensus       ALGIGAVSVAART-VFVPRYVDWLLTTPLNVLFLALLAGADRRTIAKLIALQVLTIVAGF
#oth            1.1215342352211322..1..11....31311112.12221442323322232123.1
Hut1141         :::::E::T:SGAEL::::::::::::::H:V:I::I:::G::L:::AA:::AA:::L::
rrnAC0014       :::F:SIQSEGHA::Y:V:::::::::::::W::::::::S:EDTV::VV::A::::F::
Hmu1181         :::::GFDTGTH:::WI:::::::::::::::::G:F:::::E::G::VG:::::::F::
NP4834A         :::V:W:P::E:::::::::I::I:::::I:Y::G::::L:S:EFGIV:T:NTVVML:::
VNG1764         G:::T:TT:GD::::YLA::I:::V::::I::Y::M::RPGH::S:W:L:AD:FV:A::I
hla0434         ::DV:T:::S:GD:LE:V::::::V::::LI:Y:G:::RPS::VLVG::GVD:VI:AG:I

consensus       AGAVTPGPLSWALFAVGGAAFVGLVYLLLGAIARAASDRLSRIR-SLYRTLRNFTVVLWL
#oth            21.3332432232.23122214113.2.2253232144332314321132...211...3
Hut1141         L:::FAT::KELF:IA:SL::::V::::VVEA:ET:TH:-DDVTAG:::K::::VI::::
rrnAC0014       ::::::S:V:Y::::::::L:G:VI:::YRN::V::KST::D:EV:::::::::V:::::
Hmu1181         ::::IG:L:::G:::L::L::::VG:::Y:::TD::V:T::EVGFGV:E:::::V::::G
NP4834A         :::MV::IERY:::GM:AV::I::::Y:V:PMTES::Q:S:G:K::::VR:::L:::::A
VNG1764         :A:L:T:VQR:LF::::A:GYAA:L:G:::TLP::LG:D-P:V::::FV::::I:::::T
hla0434         VA:A:T:TV::VA:G:A:V:YL::::G::VSLP:S::AEGD::::AVFG::::I:::::T

consensus       IYPVIWLLGPAGVGLLDPETATLVVVYLDVVTKVGFGLIALLGAAALERL-------A--
#oth            2..21.1.223.41212412442122.1.312..1.133.14133313322211113244
Hut1141         V:::::::A:T:Y:FM:N:::S::IT:I:::A:::::::::N:LQT::SF:::::::-::
rrnAC0014       V:::V::::A:::::M:V:::::::::::::::::::V::::AMID:---:::::::-::
Hmu1181         :::I::I::QS:L::M:L::TA:::A::::::::::::L::S:E:IV:E:GT::::QVFE
NP4834A         :::F::::::P::A::T:TVDVALI::::L:::::::F:::DA::T:---::::::R:EH
VNG1764         L:::V:::S:::I:I:QT:MY:I::::::FIS::A:VAF:V:::D:VS:::::::::VAA
hla0434         L:::V:::A:T:F:::T:T:EM::F::::I:S::::VVV:VM::D::N::DDDREFV:TD

consensus       DAAAPAADEHTAVAGD-
#oth            33434533332344211
Hut1141         ----DVS:ATGYG::ED
rrnAC0014       GS:GET:E:P:::::::
Hmu1181         :ED:VM:PD:D:QPS::
NP4834A         GESLAGV:TD:PAVA::
VNG1764         ::::::TA:P:PD-:::
hla0434         P:V::D:E:::T:L::D