6 genomes BUD1536 7 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC1022 HVO_2171 Hbo2932 Hmu0560 Hut1779 Hut2870 - - HQ3480A

Pairwise sequence scores
Consensus score	3564	rrnAC1022	HQ3480A	HVO_2171	Hut1779	Hmu0560	Hbo2932	Hut2870
1529	rrnAC1022	3596	809	657	1054	1068	997	1063
1599	HQ3480A	809	4124	808	1156	1028	1103	1082
1516	HVO_2171	657	808	3561	997	1060	966	946
2018	Hut1779	1054	1156	997	3620	1255	1165	1215
1986	Hmu0560	1068	1028	1060	1255	3529	1197	1216
2011	Hbo2932	997	1103	966	1165	1197	3595	1405
2050	Hut2870	1063	1082	946	1215	1216	1405	3639

545 symbols
consensus       MRVTRRFWAAAAAGGALAVLALVFAAPLLLVGAGGLAAWLLVAQFRFVRRARAVDRALSI
#oth            .33.2.2144323234.313122324.3123124214222154.4312454443546422
rrnAC1022       ::::::::LTIT:I:S:V:GGGLLD::::V:::V:::G:::AM::A:::GVSRLEDE:TV
HQ3480A         :QG:A:Y:KTI::::V:::G::I::R:V:I:::M::WM:T:I::I::AACI:EFCEKAR:
HVO_2171        :LP:::WA:L:GVACF:::Y:V:LDE:TP::A:C::V:::V:::VEA:GAM:::::D::A
Hut1779         ::A::::::SS:TIL:::G:::LYT::T::A:VVL:S::::TE::::A:::AHTIDTTT:
Hmu0560         :Q::::Y:TV::L:T::::WGV:V:G::PVL:S:AIG:::::R:Y::::S:TR:PQRV:V
Hbo2932         ::P:N:::G:VGT::L:C:::GI::D::::GA:ALI:GTV:MS:Y::TNELLT:SS:M:V
Hut2870         :E::::::::VG:::V:S::G::::R:I:V:::::IWGLVVG::LV::L:LL:L::SMT:

consensus       TQSLDRTRVATRETAALTLEASL--AVPTPLDVEIEPPVP--ATGAAGDPRTVTLAPGET
#oth            333344541423543642132434325444142333134222344564553423233345
rrnAC1022       S:::::S:IR:DAETNY:V:::VN::AGDH:PLS::AQI:LA:RME::PTPD:D:GASMQ
HQ3480A         :HEIEDGA::A:T:CHAR:GIEAVIPPSCRVRLQGS:::SAIDQ:SHNSD:II::DGVPI
HVO_2171        SV:VEP:S:FVGDR::V::T:::SE::DA:VE::LVA:PS::VNAPERAR:::S::::::
Hut1779         ::T:PQQ:::VESSTTV::TVQ-::RES:A::M::I:Q::::-:::R:T:QPL::D:TDH
Hmu0560         DL:-T:D::TAE:::E::VGVT:DT:M:V::T:TV::::-::--::T:::A::A:::::R
Hbo2932         E:H:S::H:L:D:PVL:::R:D:::P:E:L:::T:S:SL:LI::SVSP:E:::SV:D:QV
Hut2870         ::T::SPF:T::G:VRWS:::T::::Q::::E:S:V:TF:::V:LDVSKQPR::IP::::

consensus       EA----------------------EATYALTWPIAGAFTLPDPTVTISDRAGLFTESFTL
#oth            43111111111111111111111143356233231.643335232324154.3.313233
rrnAC1022       SS::::::::::::::::::::::SV:LP:::ETV:NY:V:GA:::V::GT::::Q:::T
HQ3480A         GRSENEVTESSVESTTQMSPTQSV:TK:EMRL:A::ETS:G:VGI::F:KW:P::Q::SR
HVO_2171        :G::::::::::::::::::::::SV:CSVEL::::RIAFDEVG:D:DG:::F::::V::
Hut1779         D::::::::::::::::::::::::T:DD:S::::::::::K::I:LR::F:::E:TL::
Hmu0560         ::::::::::::::::::::::::V:ST:V:::V::S::VD:VSLS:::AD:::AQVVD:
Hbo2932         TR::::::::::::::::::::::-QS:Q::V:T::VARFSP:E::VTGP::C:E:T:SV
Hut2870         GG::::::::::::::::::::::W:DATV:ATV::TT:I:R:::AV:GTW:::G:Q:RR

consensus       -GAGRDLT-VEPRAPRDIHVGQGGNR-IATGFGEHDAQQRGSGLDPAEIREYVPGDAVSQ
#oth            123344431.21331352.1.41.34123233.314243313.1313.3.3.11..3333
rrnAC1022       ::P:PEI::::SPSVGP:::::S:K::LLR:V:::::RG:TG::SAE:::K::::::LKY
HQ3480A         T:T::QS:Q:Y:YG:EAV:I:T::EP:VGR:Y::::::RG:G:I::L:L::::::::::D
HVO_2171        :D:DARCL::::P::EG::::R::KL:VG:T::D:SSD:T:P::V:H:T:Q:L:::TL::
Hut1779         ::TTP::V::::H:::NL:::A::DE:::ATY:S:S::RG::::::::L:K:::::PSN:
Hmu0560         :D:::EVA::S::::D:L:::E:::P::::::::QASS:I:T:IE:::::::::::::R:
Hbo2932         :AVEET::::::::::R::::::::::VS:S::::ESG::::::E:::::R::Y::DI:R
Hut2870         ::PTT::::::::QVG:V::::::ESV:::PG:R:RTGEI:::IS:::V:::::::T::D

consensus       IDWKATARLNEPHVREFEAETDRQTVLVVDHRASLADGPPGETKLDYLREVALAFVDAAE
#oth            1..11...123211121.44231325.22.3144243.44.31223221322323344.3
rrnAC1022       V::::::::D:A:::NY:::SN:SV:::L:::QT:G::A::::::EH:KA::A::QQR::
HQ3480A         :::N:::::A:AY:::Y::A:T::VL:I::N:PEMSL:TT:R:RR:HI:S:GH:IIRT:D
HVO_2171        ::::T:::M:H:YI::::S:S:YLLS::::CGSHMNR::T:R:M:S:A::I::GL:::::
Hut1779         :::::::::::TY::::::Q:::E:M::::::D:::::DE:Q::FA:::::L::MT:V::
Hmu0560         :::::::::DQ:::M:::GGA::::I::F:::::MG::RA:T:::::A:QL:V:I::R:R
Hbo2932         ::::::::::H::I:DY:MP:V:::A:I::::::T:::T:::::::F:::I:::::NS:D
Hut2870         :::::::::AS:::::::V::::::::LF:R:SR:ES::G::SM:A:::::::R::S::A

consensus       SLDDPLGLYAVGDDGVTTEIDPRARERQYRSVRSRL------------------------
#oth            433.12143212.31415545.43353313331431111111111111111111111111
rrnAC1022       ATR::::YVTID:A:::ESRV:V::AEV:::CQH:I::::::::::::::::::::::::
HQ3480A         T:S::::WV::S:::LE:FV::QSTP:::QRA:QF:DRQQESEQYRIGMDEIRNQVDVTD
HVO_2171        :HG::VSTQF::::AMEW:FG:SSSSNA:QT::R::::::::::::::::::::::::::
Hut1779         G::::::IT:ID:::I:AQ:::SQTRN::E:::T::::::::::::::::::::::::::
Hmu0560         TD::G::Y::::::::::A:S:LV:TDAWAT::TK:::::::::::::::::::::::::
Hbo2932         :::::I:::T:::E:T:NTAP:::S::::::I::T:::::::::::::::::::::::::
Hut2870         N:::::::::I::G:::D:VM:::D::T:EHI::::::::::::::::::::::::::::

consensus       RELTPTGGP---SGADARQPGAAQ------ARRMATRLADDDSAFAATLRPYFADGTRYV
#oth            453311435211444344433535533211543533324435132242141133345424
rrnAC1022       GD:DTETET:::PPTATTTATHTGT:::::MTG:VNPA::TQ:PIE:::LA:-RSAAGSK
HQ3480A         ::I:::PA:TLLKQSSG::D:NP:SLTD::RQQ::RT::AEE:Q::NRVQ:F::EQ:G:M
HVO_2171        LSME::AS:R::RPV::SR:V:PE::::::DA:KRS::L:::::::::::::LR::ES::
Hut1779         H::::::SQ::::HG:Q::QT:T:ATR::::NTVG:V:QG:TTEYGT::Q::Y:SRKTH:
Hmu0560         LAAAT:D:R:::::GVG--::RSP::::::NT:L:S:V:S:::::GR::E:FLSE:GA:Q
Hbo2932         :N:E::T:E::::::ADAK::Q:AI:::::S::T::T:SE:NT::GE::::::GATN::A
Hut2870         QTA:::::A:::ET:::STAME:DLIGPGT:::N::::REAA:PY:RS:H:F::::::::

consensus       RRIADRPLFGATKAALSRSDGAVWLVILTDDSNRRELREAVKLARRRGGRVVVFLTPSAL
#oth            433513..24343434534544333124.1.3526.23221341334444131.21.422
rrnAC1022       :HLP:Q::YNGLQ::PQEVRS:DL:::C:::::PN:::NT:G::::NATE::::I:::VA
HQ3480A         QE:GAD:::HS::I:TT:TP:T::SI:::S:DK:Q:VL:T:RM:Q:DD:H:L:::::A::
HVO_2171        S:VS:::::D:V:S:C:::NRQDH::LV::::AKV:TY:::VV:SK:SSQTS:::::TTF
Hut1779         E:VT:E:::H:VN-Q::D:EPTRL::VA:::TH::::Q::::::VQ::NQ::A::::N::
Hmu0560         Q:FDAQ::A::IRT:EYP::IV:RT::V::::RPD:::A::RR:S:N:ST:A::M::T::
Hbo2932         D:F::::::ST:QSR:G:LQ::::S:V::::T::S::Y:SI:AV::TE:::L::I:::::
Hut2870         :Q:::::::::G::Y:P:I::EM:V::F:::RD:T:V::T:::::EH:R::::::A:G::

consensus       FDSDALADLDAAYARYRAFEEFRRRLARLDRVTAYEVGPGDRLEAALSA---GRTRRRRE
#oth            .24533333332135113.12..23.433231411.112422343324422125244222
rrnAC1022       ::T:L:T:::T::E:::::DQ:::E:NEI:S:::::::SP:QIS:I::GSP:AN:DQ:GS
HQ3480A         :SG:--ESI:DT:::::S:::::Q::S:Y:::Q:F::A:Q:::LDV:NRRRV:ESDD:::
HVO_2171        ::DA:D:AATDFA:GLV::::::KL:E::PN::V:::A:KSAMAL:TAR:::AT:AE---
Hut1779         :ERY::::ME:T:EA:VS::::::T:D::P:TRVF:::::::ID:::R:::::::::GG:
Hmu0560         :E:SE:T::AG::SD:V:::::::E::GMEG:D:::I::::::S:V::::::::::::::
Hbo2932         :::T-:GNIE::::E::E::S::K::NK::G:::F::AHET:::SIRQS::::PSSQ::S
Hut2870         :ETELVG::::::TS::G:::::QT::G::::E:::::::::V::L::T:::-----:::

consensus       VA---
#oth            42442
rrnAC1022       :-:::
HQ3480A         ::SVQ
HVO_2171        --:::
Hut1779         ::HES
Hmu0560         S::::
Hbo2932         EGWG:
Hut2870         QGGRQ