|
Pairwise sequence scores | |||||||||
---|---|---|---|---|---|---|---|---|---|
Consensus score | 1306 | HQ2159A | hla2199 | VNG6402 | HVO_A0394 | rrnAC1059 | HQ2950A | VNG6357 | Hut1558 |
586 | HQ2159A | 1793 | 400 | 381 | 409 | 426 | 321 | 416 | 405 |
1045 | hla2199 | 400 | 1420 | 1148 | 1196 | 478 | 416 | 421 | 430 |
992 | VNG6402 | 381 | 1148 | 1288 | 1175 | 453 | 430 | 418 | 414 |
1053 | HVO_A0394 | 409 | 1196 | 1175 | 1285 | 480 | 428 | 436 | 432 |
619 | rrnAC1059 | 426 | 478 | 453 | 480 | 1304 | 341 | 503 | 461 |
565 | HQ2950A | 321 | 416 | 430 | 428 | 341 | 1315 | 536 | 532 |
670 | VNG6357 | 416 | 421 | 418 | 436 | 503 | 536 | 1477 | 1232 |
656 | Hut1558 | 405 | 430 | 414 | 432 | 461 | 532 | 1232 | 1466 |
255 symbols consensus -------------DPSP----------------------------TETFDDVNEAVKADW #oth 12222222222344432111111111111111111111111111132232.11231441. HQ2159A :MCVYGMVYCMTG::::DGPDEFPSEEEIPNEPVTVDDIDPFSVNDDD:E:IDDFAA:E: hla2199 MFSSGNYLFLNCVA::M:::::::::::::::::::::::::::::::W::I:KQ::::: VNG6402 :::::::::::::---M::::::::::::::::::::::::::::A::G:::::Q::::: HVO_A0394 :::::::::::::---M:::::::::::::::::::::::::::::::W::I::Q::::: rrnAC1059 ::::::::::::MNFD:::::::::::::::::::::::::::::::EYE:::::AVT:: HQ2950A :::::::::::::M:D:::::::::::::::::::::::::::::AP::E::::R::R:: VNG6357 :::::::::::MN:RN:::::::::::::::::::::::::::::P:E:A::::::GEE: Hut1558 :::::::::::MN:Q:Q::::::::::::::::::::::::::::P:E:A::::::EDE: consensus KAETTPFERIREVVEQTHDPQSAAEIADRALVSEPTARRHLKSLANEGFV-ETEQDGQ-G #oth 23211241.1341243123141.331113.2321321.32144.123.311126333222 HQ2159A :DQS:AD::::T:INR:TT:K::SD:S:T:::::TK::TT:NK::E::I::RSH:TDS:: hla2199 :::::::::VY:I::::::G::::::::::::::::::::C:::V:T::A:::D:::::T VNG6402 QDD::::::VY:I::::::G::::::::::::::::::::C:A:V:T::A:::::::::T HVO_A0394 ::D::::::VY:II:::::G:::::::E::::::::::::C:::V:T::A:::::::::T rrnAC1059 :S:::TR:::KA:IMR:TE:T::S:V::K:SA:::VV:DE:TD::DS:L:::KIDG:::: HQ2950A :RD:S:SD:VQS:MRTAYE:LA:TTV::K::R::Q:::K::R::VEH:Y:T::ASPNSKV VNG6357 E:::::Y::::H::AH:YS:V::DAV::D:RTAPK:::K::NT::D:::::::TPGE:G: Hut1558 ES::::Y::::H::AHAYS:V::DAV::D::TTPK:::K::ET::E:::::::SPGEHG: consensus TLYRRNPDRLLMEQIRELREEVTRDELVDRIQEMKAELREYRDRYDVVSPEELA------ #oth 2..2.33234333122323233243112332321123232133412131.2112122111 HQ2159A K::S:D:EWH:LK:::K:---A:SET::NQ::RI:Q::T::KSK:::NG::::L:::::: hla2199 :::::DS::I::SR::::::::::P::L:S:RD::::I:R:E:S:::::::::::::::: VNG6402 :::K::S::V::SR::::::::D:P::L:S::D::::I:R:E:::N:::::::::::::: HVO_A0394 :::K::S::V::SR::::::::::S::L:S:::::::I:R:E:::::::::::::::::: rrnAC1059 A::K::DQMYIYQ:VLK:HD:YSA::::EKL:D::QTVSDI:TT:G:E::A::::::::: HQ2950A :::::AN:S:AL::A:RMLDQTDV:TRST:VL::REQ::::GE:FNAN::DAVV:::::: VNG6357 :::::S:ES:VV::AADIL:H:ST::::T:::::REQ:T:::SEFG:D::::::VNQTNQ Hut1558 :::::S:ES:VV::AADIL:H::T::::T:VT::RER:N:::TE:G:D::::::VERTNQ consensus ---------QQLDPDE--GWDDLTAWRTTRRNLAFAQAALAYDEAEHQLAV--------- #oth 2111213343211332431111334.2.2221.23141.223441243354333321323 HQ2159A ::::::ISDKE::QN:L:--::ISH:::AE:E:SHLR::YRLK::KE:ASIVDEPEDRRT hla2199 :::::::::::::G::AE::::::::::::Q:::V::::::::::S:::::::::::::: VNG6402 ::::::::::::EAG:TD::::::::::::Q:::V::::::::::S:::::::::::::: HVO_A0394 :::::::::::::A::TG::::::::::::Q:::V::::::::::S:::::::::::::: rrnAC1059 :::::::::::::::DRE::E:H:T:Q:AQK::YL:K::ISFYD::KMVV-::::::::: HQ2950A ::::::RAHADI::--::--ET:ME:Q:::::::::EV:::LSGV:DVSK:AEAA::::: VNG6357 ALSETGSPQDEI::--::--ETIRE:K:L:::::::N:::SIGN::QFVDSDRRSTDDSV Hut1558 TLSESGSAG:EI::--::--ETVRD:K:L:::::::N:::SIGT::QFVGEDDRSTDESI consensus --------------- #oth 221111111111111 HQ2159A DNQTTTPSNNQAPLQ hla2199 ::::::::::::::: VNG6402 ::::::::::::::: HVO_A0394 ::::::::::::::: rrnAC1059 ::::::::::::::: HQ2950A ::::::::::::::: VNG6357 PA::::::::::::: Hut1558 PA:::::::::::::