6 genomes BUD1601 8 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC0452 HVO_1576 HVO_2040 Hbo2970 Hbo3472 - - hla2228 NP3504A HQ2650A

Pairwise sequence scores
Consensus score	2332	NP3504A	hla2228	rrnAC0452	Hbo2970	HVO_1576	HVO_2040	Hbo3472	HQ2650A
1678	NP3504A	2325	1436	1587	1611	1632	1595	1502	1489
1849	hla2228	1436	2392	1677	1762	1712	1737	1695	1647
1876	rrnAC0452	1587	1677	2344	1809	1757	1760	1717	1713
2059	Hbo2970	1611	1762	1809	2325	1958	1929	1896	1816
2137	HVO_1576	1632	1712	1757	1958	2348	2084	1975	1855
2096	HVO_2040	1595	1737	1760	1929	2084	2356	1895	1790
2042	Hbo3472	1502	1695	1717	1896	1975	1895	2340	2027
1978	HQ2650A	1489	1647	1713	1816	1855	1790	2027	2320

313 symbols
consensus       MHGKRVLVTGGAGFIGSNLANHLAEDNDVIAVDDLYLGTPENLDDAVEFVDASVLDDDLP
#oth            .4321......1....11...3.144.1.112..31....1.1224.112232.111.1.
NP3504A         :D:Q:::::::::::::T:::R:SVT:::VV:::C::::::::ES::T:NER::::::::
hla2228         ::DQ:::::::::::::::::R::A:::::::::T::::::::::N::::E:D:I:::F:
rrnAC0452       :ENQ:::::::G::::A::::K:::N:::V:L::G:::::::VSED::Y:EQ::::::::
Hbo2970         :Q::Q::::::::::::::::A::P::::::I::C:::::::::SG::::::::::E:::
HVO_1576        :N::::::::::::::::::::::DE:E:V:::::::::::::::::::H::::::::::
HVO_2040        :D:::::::::::::::::::::::::::::I:::::::::::::::::H:TT:::::::
Hbo3472         ::D:::::::::::::::::::::DS:E:::::::H:::::::SS:::::::::::::::
HQ2650A         ::EN:::::::::::::::::::::T:E:::::::H::::S:::ET::::N::::E::::

consensus       T-DVDVVFHLAALSSYKMHEENPTRGARVNVEGFVNTVEQAREDGCDTVVYASTSSIYGS
#oth            1311..1..1..1..15.2.4112412...1.....2..1..51..2.1...11..1..1
NP3504A         :::::::::C::::::P:::SD::::::::::::::V:::::A::::::::::S::V:::
hla2228         A:::::L::::::::RN:::ND:Q::C:::::::::A::R::QE::E::::::::::::N
rrnAC0452       ::::::::::::::::A:::D:::H:::::::::::::::::D:::::I:::::::::::
Hbo2970         ::::::::::::::::Q:::QD::T:::::::::::::::::K:::E:::::::::::::
HVO_1576        :D::::::::::::::::::::::KA::::::::::::::::N:::::::::::::::::
HVO_2040        :EG:::::::::::::::::::::K:::::I:::::::::::K:::::::::T:::::::
Hbo3472         :EGI::L:::::Y:::T:A:::KRAAT:::::::::A:::::::::E:::::::::::::
HQ2650A         :A:I::::::::Y:::T:V:::KQTAT:::::::::::::::::::Q:::::::::::::

consensus       RTEPSPEDMPVEARTGYEASKLARERYAEYFHNHYDMTLAGLRFFSVYQGFGGAEEHKGE
#oth            111.111322122112.....11..2.1..151111142..1.1......1.11.2....
NP3504A         :S::TT:AA::A:NS::::::::::::::::SH::GLS:::M:L::::::Y:A::G::::
hla2228         ::::::V::D:::::A::::::::::::::YG:YH::AM::::::::::::::N:K::::
rrnAC0452       :::::::::D:TVN:::::::M:::T:::::Q::::L::::M::::::::Y:::::::::
Hbo2970         :::::::S:AI::::::::::::::Q:::::Y::::L::::M::::::::::::::::::
HVO_1576        Q::::::E::::::::::::::::::::::::H::::RT:::::::::::::::::::::
HVO_2040        ::::::::::::S:::::::::G:::::::::H::::Q:::M::::::::::::::::::
Hbo3472         :::::::::::::::C:::::::::Q:G::::H:::::::::::::::::Y:::::::::
HQ2650A         ::N:::::L::::::C:::::::::T:::::N::::::::::::::::::Y:::::::::

consensus       YANTVAQFADKIANGERPELFGDGTQTRDFTHVDDIVRGLELAADHELQGIYNLGTGESY
#oth            1..21...2221.3.13.211.1.2.....1..3.1111222..132.311..1..112.
NP3504A         :::L::::V:D::T::::AIY:::::::::I::E:V:AA:CS::EAA:D:V::V:::DR:
hla2228         ::::::::::A:::::A:::::::S::::::::S:VA:AC::::::::T:V::V::E:A:
rrnAC0452       :::VI:::::DL:S:DA:K:Y:N:E:::::::::::::::V:::E:::NDV:::::::A:
Hbo2970         ::::::::TE::::::Q:::::::S:::::::::::::::V:::E:::N:V:::::::::
HVO_1576        F:::::::T::::A::S::::::::::::::::::::::I::::::R:::::::::::::
HVO_2040        F:::::::T:::::::S::::::::::::::::::::::::::::ER:::::::::::::
Hbo3472         :::::::::H::::::::::::::S::::::::N:::::I::::::R:::::::::::::
HQ2650A         :::::::::E::::::::A::::::::::::::::::::I:D::EY::::::::::::::

consensus       SFNEMVEMINEELGTDIEPKYIENPL--DVYVHDTMADCSKIREATGWEPEISFEEGVER
#oth            11.22.321.131.1.13.2.1.1.21112..1..2..5113221.2.1.322.11.241
NP3504A         :L:DL:DK:::TV:A::R:::V:::IPE::::T::C:::::L:SE:N:::TVG:D:::K:
hla2228         ::::::A:::DA:::::D:V:::C:F:::G::::::::Y:TFH:::::::::G::::::L
rrnAC0452       D::TV:::L:D::::::::E:::::IPE:::::::C::F::MH::::::::T:::::I:L
Hbo2970         ::::::A::::V::::V::::::::::::E::::::::PT:MK:::::::::::::::Q:
HVO_1576        ::::::D::::A::::V::E:::::::::::::::K:::T::::::::::K::::::LR:
HVO_2040        :::::::::::V::::VG:V:V:::F::E::::::K::Y:::HD::::::QV:::A::::
Hbo3472         D::T::RL::::::::V:::::::::::::::::::::TT::::::::::K:::::::Q:
HQ2650A         D::T::::::D::::::D::::::::::E:::::::::ST::::::E:T:K:T:::::S:

consensus       VCEPYLD------
#oth            ..21.43411111
NP3504A         :::Q:R-::::::
hla2228         :::::SERAPEEV
rrnAC0452       ::A::T-::::::
Hbo2970         :::::::E:::::
HVO_1576        :::::::E:::::
HVO_2040        ::Q::::G:::::
Hbo3472         :::::::D:::::
HQ2650A         :::::MN::::::