6 genomes BUD1605 6 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC2592 HVO_2977 Hbo1552 - - hla0581 NP1818A HQ1035A

Pairwise sequence scores
Consensus score	2433	NP1818A	HVO_2977	Hbo1552	HQ1035A	hla0581	rrnAC2592
1733	NP1818A	2399	1537	1550	1527	1529	1565
2005	HVO_2977	1537	2429	1814	1803	1631	1650
2096	Hbo1552	1550	1814	2426	1942	1566	1681
2055	HQ1035A	1527	1803	1942	2454	1588	1753
1804	hla0581	1529	1631	1566	1588	2567	1809
1946	rrnAC2592	1565	1650	1681	1753	1809	3245

444 symbols
consensus       ------------------------------------------------------------
#oth            111111111111111111111111111111111111111111111111111111111111
NP1818A         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
HVO_2977        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
Hbo1552         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
HQ1035A         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
hla0581         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnAC2592       MTHDGTGRPNRALSPDATGMGPRTVPRHDNAPGLRENRERGRGHRGRVHAGLFPRRLRHP

consensus       ------------------------------------------MRKFVFFGGKGGVGKTTV
#oth            111111111111111111111111111111111111111111.2411............2
NP1818A         :::::::::::::::::::::::::::::::::::::::::::VS:R:::::::::::::
HVO_2977        :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::M
Hbo1552         :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::L
HQ1035A         ::::::::::::::::::::::::::::::::::::::::::::TH::::::::::::::
hla0581         :::::::::::::::::::::::::::::::::::::::::::ER:::::::::::::::
rrnAC2592       VAGVVLHRRTAAVPRRHLRGLGAAAVGQRLVHRTQRPAVPLL:EP:::::::::::::::

consensus       SSAYAVKCARDGLDTLVVSTDPAHSTSDVFDQQFGDEPAAVEGEDNLDAMEIDPETEVQR
#oth            12.11221.13.22..2........2......2.1.2.11.33332.2...1..22.232
NP1818A         AA:HG:A::::::E::::::::::::::::::::::V:QP:SAH:R:H::::::QA::DD
HVO_2977        ::::::::::::VR::L:::::::::::::::S:T::::::AD:P:::::::::::::RE
Hbo1552         A::::L::::E:::::::::::::::::::::::::D:Q:::::T::A:::V::D:::E:
HQ1035A         :::::L::::T:I:::I::::::::I::::::N:T:::::::RV:::::::::::A:TE:
hla0581         :C:::SR::N::VR:::::::::::V::::::S::::::P:D:IEG:::::::::D:M::
rrnAC2592       :C::G::S::S::::::::::::::V:::::::::::::::::I:G:::::::::::T::

consensus       HLMETRRALGDQVSPAMVNEIDRQIEMAHQTPGAYEAALFDRFIDVMR-NADEYDRVVFD
#oth            ..212132112.1.1...1.122.1..1.1......1..1.2.12..1122131..1...
NP1818A         ::Q:L:QQ::Q:L:::::::VSM:L::::::::::::::::C:V:::Q::::D:::::::
HVO_2977        :::::K::M:::::::::::::::::::::::::::S::::::::::::S::::::::::
Hbo1552         :::::K::M::::::::::::::::::::::::::::::M::::E::::S:::F::::::
HQ1035A         :::::K:::S::::::::::V::::::::::::::::::M::::::::::S:::::I:::
hla0581         ::Q:I:E::SE:::A:::S::N::L::S:G:::::::::::A:VS:::EEGES:::I:::
rrnAC2592       ::DGI:ND:SE:::A::::::NQ:L:::::::::::S::::::V::::::::P:::::::

consensus       TSPTGGTLRLLSLPEFLEGWIDRLLHKREKSIDLFERAAIGNNEPRRMMDGDPILDRLQT
#oth            .1...1.....2..13.23.12..31..12.1111.1....1311..311...112..34
NP1818A         :::::::::::A:::Y::Q:VE::R:::::::KN:::::::DQQA:::LE::::I::::E
HVO_2977        :::::::::::::::Y:D:::Q::::::KE:VK:::::::::::::::::::::IA::EQ
Hbo1552         ::::::::::::::DL::S:::::VY::::::::Y:K:::::::::::::::::::::R:
HQ1035A         ::::::::::::::DM::::::::VY:::Q::::Y:::::::E::::I::::::::::T:
hla0581         :A:::S:::::G:::::GD::::::Y::KQ::::::K::::DM::::L:::::V:E:::R
rrnAC2592       :::::S:::::G::::::::::::M:::::::::::K::::::::::V:::::V:A:::D

consensus       RKERFEFAGETLRDNAAFFLVLNPDELSIRETRRAIDELQEYDLTVRGLAANRLTPEPDP
#oth            .123.1..2221142...11.2...1..22..3..12424221.412..11.1...1.11
NP1818A         ::RN::::::V::NE:::TF:::::::::H:::::LES:::A::::D::VV:K:::D:::
HVO_2977        :RDD:S::K:::::D::::::V::::::L:::E::::Q:DD:G:D:::::V:::::::::
Hbo1552         :::::::::::::E:::::::V:::::::::::::::D:ES::::IC:::::::::::E:
HQ1035A         :::::::::::::T:::::::A::::::::::Q:::::::S:::E:::::V:::::::::
hla0581         :::F:::::D:M::E::::::::::Q::VN::G:::EGFA:R::R::::V::K::::::D
rrnAC2592       :::F::::SGA:EAD::::::::::Q::VN::::::A:MR:R::S::::V::K:::::::

consensus       DEEGRGARFLRDRVATERERLRELRENFDPPLVAEIQTRVAEVKGDLLDAVAAELDIDTA
#oth            3.4.1..21..21.31.111.432113231.1..1131.23.12.14.33..21.13223
NP1818A         ::T:T::A:::N::SR:::::ETI:SELE::V:::::S:AE:IT::T:T:::::::TR--
HVO_2977        E:S::::T:::E::K::::H:DG:::::S:::::AVE:::::::::F:GE::::::::::
Hbo1552         H:::::::::::::E:::::::::::D:RY:V:::VA:::S:::::::::::H:::L:VT
HQ1035A         N:N::::::::::::::::::N::H::I:::V::::::::S::::TI::T::E::S::VD
hla0581         :::::::TY::EK:::::D:::QV::E:E:::::::ES:TR::R::V:AE:::A:::E::
rrnAC2592       ::D:::::Y::::::::N:::Q:V::TL::::::::T::T:::::::::D::::::VE:D

consensus       ADS--------------PV-----
#oth            533111111111111112442221
NP1818A         ---::::::::::::::::E::::
HVO_2977        P:V::::::::::::::Q-:::::
Hbo1552         IE:::::::::::::::HA:::::
HQ1035A         QV::::::::::::::::DTVSSG
hla0581         S:VSGEDDDRTRSDDGG::RADR:
rrnAC2592       :EM:::::::::::::::TFV:::