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[R] (-) COG4666 TRAP-type uncharacterized transport system, fused permease components
6 genomes BUD1616 6 proteins
a Hsa
Halobacterium
sp. NRC-1
b Hma
Haloarcula
marismortui
f Hvo
Haloferax
volcanii
g Hbo
Halogeometricum
borinquense
h Hmu
Halomicrobium
mukohataei
i Hut
Halorhabdus
utahensis
j Hla
Halorubrum
lacusprofundi
q Nph
Natronomonas
pharaonis
x Hwa
Haloquadratum
walsbyi

VNG0537

rrnAC2578

- -

Hmu2984

-

hla0947

NP0540A

HQ1444A

Pairwise sequence scores
Consensus score6500 NP0540A hla0947 HQ1444A VNG0537 rrnAC2578 Hmu2984
3932NP0540A 6677 3363 3211 3345 3510 3436
4893hla0947 3363 6990 4552 4002 4165 4008
4528HQ1444A 3211 4552 6527 3795 3942 3822
5084VNG0537 3345 4002 3795 6598 4632 4393
5259rrnAC2578 3510 4165 3942 4632 6516 4641
5140Hmu2984 3436 4008 3822 4393 4641 6538

970 symbols
consensus       -----------------MSADPRPTD-G--------------EA-SDEDADDLLQEIERK
#oth            1111111111112222233543232142233332321233223344422323212....1
NP0540A         ::::::::::::MTDASSDPED:::NT:TDADRSDE:RSPTDTVDAE::PENI:E:::::
hla0947         MTTTNRTDGGIDDSNDGG:GG:P:G:L:SGSGADEPPDDRTD:EI:R:E::::IE::::R
HQ1444A         :::::::::::::::::::::TPSDNPRSSTETDN::DNVIQS:SDT::TTE:ID::::R
VNG0537         :::::::::::::::::::N:HST:::-::::::::::::::--:-AP:::SV:::::::
rrnAC2578       ::::::::::::::::::TENT:SD:D:::::::::::::::::V:::EV:EV:::::::
Hmu2984         :::::::::::::::::--MT::I:::-::::::::::::::--:T:VA:::::::::::

consensus       RSLRGWAVVAVAAIGILFSVFQLWLAARGFVLSVSLPIVGTVRIA------SLQLLQINA
#oth            .1.21422231131.12..21.1211.212233232.421425231111111111..111
NP0540A         ::::::S::L::VV:::::A::M::S::::IVE:TV:LA::Y::T:::::::FET:::RS
hla0947         :::::P:AI:::I:::A::::::F::::SYTFTIW::T:DIAG:SIAPWQV::::::A::
HQ1444A         :::T:I:A:IT::::V:::I:::L:::QS:TITLWA::::::N:-::::::::::::A::
VNG0537         :D:S:RI:L:::::::A::::::::::::S::::::::::S:TL:::::::K::::::::
rrnAC2578       :::T:::::L::L:::S:::::M::::K:::::I:::G::D:VF::::::::::::::::
Hmu2984         ::::RV:S:V:SIV:::::AY:M:F::::::FA:E::VL:E:EL::::::::::::::::

consensus       IHVAFALVLTFLLYPASTGDGRLARRCGRLAAAVSARLGASHPVSRAIAAIGTGLAWAFL
#oth            1..3.1.111...1.321.2.33214232355424321.53312331353324211.222
NP0540A         V::T:::IMA:::::PL::A:::T:SI:GFLDV::N:V:G:--IAA:::FLRRAVR:FCF
hla0947         :::::::::::::F:V:::::MVT:NF::I:P:A:Q:::DRS::T::LEGGR:::R::::
HQ1444A         :::T:::::::::F::TM:E:FISQTFS:AHTT:VET::E:N:L:KV:THLA:V:R::::
VNG0537         V::::::::::::::::::::PV::::K::SE:AT::::S::::T:V:N:V:A:::::VV
rrnAC2578       V::S:G:I:::::::G:::::P:S:::IA:GSL:DEK:::E:::::VVH:::SA::::::
Hmu2984         :::G:::::::::::G::::::F::A:SG:R:RTA::::PDS:LVS:MD:::D::::L:V

consensus       DPDRDRVTPSDILFIAVAVLSAAYFITDFAEIQR-MRVLGLEAGRPIQEVF---------
#oth            .2232111.3.43212324.333..31214.11212.21.14311124112111111111
NP0540A         ::NKE:I::L:G:L:VS:L:PVV::FRRYD:Y:NVI:::::QNAAT:D:I::::::::::
hla0947         ::::E::::V::::::::F:::F::M:E:::::N::::F:VDS:::VT::Y:::::::::
HQ1444A         ::N:R:I::F:VIS:IA:I:TTT::::::E::::::::F:::S:::VV:IY:::::::::
VNG0537         :D:L:A:A:V::A:A::SA:A:V:::::::::RE:L:Y:::T::::LPT:WLGYLDVIRP
rrnAC2578       :AEM:::::::FV::VLS:::::::V:::N:::::::A::::R:::::::::::::::::
Hmu2984         :::L:::::::L:L:::T:::S:::V:::R:::::::A:::P::::::::::::::::::

consensus       ------PFLNPLAGLLGPLADTSYALVLGVVGVLLVLEATRRAIGLPLMLIVAAFIVYAR
#oth            11111123.3.32221122343.1.32..23.11........111.3.241.22.13.1.
NP0540A         :::::::A:E:::--V::::TY:V:YL::IL::::::::::::L::L:TGL:SI:VL:G:
hla0947         ::::::A::Q::L:GVPFVSEY:::MI:::A:I:::::::::TL:::::::::T::::::
HQ1444A         :::::::I:::VL:G:PIIG:I::::L:::I:I:::::::::TL:::::::::T::I:::
VNG0537         VFDALS:V:::AGA:::::GH::::::::A:::V::::::::::S:W::C::::::A:::
rrnAC2578       ::::::T::E:I:::::::::::::F:::A::::::::::::::S:W::V:::::V::::
Hmu2984         ::::::T::D:V:::::::TNV:::F::::::::::::::::::S:Y:VF::G:::::::

consensus       FGYLIPQDAAYLGLLAIPELSWPDIIQNLWYNTENGVFGIPVTVSVQFIYIFILFGAFLE
#oth            2.1..1313132131111123.131111...11.1.1.....1..12...1.....1...
NP0540A         Y:::::S:M:GI:Q::VR:NR:DQV:SY:::TG:-:I:::::S:::R:::::::::::::
hla0947         W::::SG:TPF:::::::P::::::V:::::::::::::::::::MS:::::::::S:::
HQ1444A         W::::STTTPL:::::::::T:::::::::::::::::::::::::S:::::::::::::
VNG0537         ::::::::V:::QIIS::PFA::E::::::::::::::::::::::::::V:::::::::
rrnAC2578       ::V::::::::I:V:S:::::::S::::::::::::::::::::::::::::::::::::
Hmu2984         ::V::::::::V:V:S::::T::S:V::::::::::::::::::::::::::::::::::

consensus       MSGAGQWFIDLAYGATGTRKGGPAKASILASGFMGTISGSSIANTVTTGAFTIPLMKRSG
#oth            .....1....1..21..2.........111.....11....1...............1..
NP0540A         :::::K::::F::SL::::::::::::VVS:::::ML::::V::::::::::::::::::
hla0947         ::::::::::::::L::D::::::::::::::::::::::::::::::::::::::::::
HQ1444A         :::::::::::::AL::R:::::::::::::::::::::::::::::::::::::::Q::
VNG0537         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnAC2578       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
Hmu2984         :::::::::::::A::::::::::::::::::::::::::::::::::::::::::::::

consensus       YSPEFAGAVEASASSGGQILPPVMGAAAFLIVQYTATPFADVIVAATIPAVVFFFGVWVM
#oth            .21..1.1..1.2.................1.1..2...1.1.13.1...21....1...
NP0540A         ::::::::::S:T:::::::::::::::::::E::G:::R:::::::::::A::::M:::
hla0947         :D:::S::::::::::::::::::::::::M::::S:::::I:II:::::I:::::::::
HQ1444A         ::A::S::::S:S:::::::::::::::::M::::::::::I:IL:::::::::::::::
VNG0537         :R:::::::::::::::::::::::::::::::::G::::::::::::::L:::::::::
rrnAC2578       :::::S:G::::::::::::::::::::::::::::::::::::V:::::I:::::::::
Hmu2984         :::::::G::S:::::::::::::::::::::::::::::::::::A:::::::::::::

consensus       VHFEAVKEDIGGLDADDLVNLRSHLKRGWFYLVPIALLLYYLIIERLSVSRSAWFTIVAI
#oth            ..11.3321...13533222224.233..1.12.13...1.1121...12.11.1.1112
NP0540A         :::::A:H:::::AREQ:LD:KP:I:::::::F::V:::::IVGA:::IG:AG:L::::T
hla0947         ::LK::Q:G:::VSGE:T::FWD:F::::::::::::::::::::::::::::::::::L
HQ1444A         ::LK::E:G:::V::AE:IS::E::LD::Y:II::::::F::::::::::::::::L:SL
VNG0537         :::::G:::::::GT::::S:::::RT::::::::G:::::::V:::::A::::::::::
rrnAC2578       ::::::::::::::SSE:::::::F:S:::::::LG::::::::::::::::::::LI::
Hmu2984         :::::SRLG:::::P:SV:DI:R::WT::::::::F:::::::GA::::A::::::L:::

consensus       VALIALVAAYNDETRGRLGAVLAAIGGAELLSQALAGVGLVAALSGGGAGGLPLGGAFAA
#oth            2.121..2..222..231424131352242113333.23123333.3233321434.431
NP0540A         I:IV:::::::ER:::IIAGG::VALA:NIA:Y:T:::::ITLAF::SGES::VAA:LR:
hla0947         :::V:::S::SE:::L::F::F:::V:V:FA:H:::::NV:GLVT:A:GA:::P:E::S:
HQ1444A         ::::T::G:::KD:::V:TLS::::I:V::::HSF:::SV:EFI::TR:NDM:ASV:IDT
VNG0537         G::M::::::G:::::L::G::TVVT:GT::AEW:G:GS:::V:T:::::AQ:::::V::
rrnAC2578       G:::::::::G::::A::::I:GVLF::S::::F:F:A:VLG::A:D:T:SQS:ID::S:
Hmu2984         ::::T:::::S:::::::V:L:L:L:LGQF:A:WST:AP:::::::::P:::SI:::A::

consensus       TLGRIGWLAIAAGVLTLLSKPRLDASLLELDPAVDDTAEAISDAVGRP-LADNGLFRLGT
#oth            312522321112112112321322122.31131.22112333312212332422231212
NP0540A         G::DLDAI::LL::AV::YDRSGT:P::S::S::::::D::D:RL::::V:ASRAG:FA:
hla0947         I:AG:E:Y:ML::::::::::D::::::::N:S:Q::::T:G:RTD:D::ENSQP:K:::
HQ1444A         V:P::::YI:::SI::::Y::KAVSAH:::N:S:LN:V:DV:SRTNAN:IG:YQ:::::A
VNG0537         :::EL:::::::::I:MALR::A:::::GF:D::::::G:V:A:::::S::G:::::Y:V
rrnAC2578       :V:N::T:I:LS:::::ITR::::SP::SF:G:::::::TTA::::::D::S:::YK::V
Hmu2984         :::TV:R::::::::::::::::T::W:A::::::EA:DGL:T:::::AAG::::V::::

consensus       FVLKSMEDGARTAVPVVIAVAAAGIIPGVISVSGLGPNLVSLILALAGGSLVILLLVTAI
#oth            .232..13.....11..1......1...1.121......22.143111..3.22.22112
NP0540A         :I:::::A:::::TV::V::::::::::I:GLT::::::AR::VTVSA::F:V:::LAGV
hla0947         ::VT:::Q:::::::::V:::::::::::::::::::::T::L:::S:::I::M:::::V
HQ1444A         :IFE:::::::::::::::::::::::::::::::::::T::L:V:S:::V::M:V:::F
VNG0537         :T::::::::::::::::::::::V::::::I:::::::::::Q:V::::::VV:AI:::
rrnAC2578       ::G::::S:::::::::::::::::::::::::::::::::::T:V::::::L::::::F
Hmu2984         ::::::DS:::::::::V::::::::::::::::::::::A::RS:::::::L::VI:::

consensus       SSIILGMGMPTTVTYIILVSMLAPALVEFGIPLLAAHLFILYFGVIADITPPVAVAAYAA
#oth            11.11........1....221.232132..1.1..1..1...1.11..1........1..
NP0540A         :A::V::::::::M:::::A::GR:FP:::V::::V::Y:::L:LM::V::::::::F::
hla0947         ::::::::::::::::::I::::TP:::::::::::::::::::::::::::::::::::
HQ1444A         A::L::::::::::::::I::::SP:::::::::::::::::::::::::::::::::::
VNG0537         ::::::::::::::::::SVL:V:V:LP::V:E:::::Y:::::::::::::::::::::
rrnAC2578       ::::::::::::::::::::L:::::T:::V:::::::::::::::::::::::::::::
Hmu2984         A:::::::::::::::::::::G::::T::::E:::::::::::::::::::::::::::

consensus       SGVAKSDPFETGIEAFSLSLNKAIVPFAFVLTPGIVLLRRK-NAAELPLREQYRVVGFAD
#oth            1.1...1112.112..1.....11.....122..12.1.3242223214333222334..
NP0540A         ::::::E:I::A:Q::L:::::IL::::::F::::M:::PDGDPG:T------NLLSW::
hla0947         ::I:::::::::VK:::::::::::::::::A:::::::E:A:::D::I:::::::::::
HQ1444A         ::::::::::::VK:::::::::::::::::A:::::::K:S:::::::::R:::IE:::
VNG0537         A::::::::D::V:::::::::::::::::V:::VM::::-:::GS::PGD::S:::V::
rrnAC2578       :::::::A:::::::::::::::::::::IV::::I:I::-:----A:TDSG::I::T::
Hmu2984         ::I::::::Q:::::::::::::::::::::V:::::::E:DD::::::G::F::ATP::

consensus       LLDLGYSVPEILIPIAGVFLGVVALAATVIGFLYAPVSRAERAAFAVSSLLLMAPGLLVS
#oth            12121222..132.13.112..2..1311..3311313152.2321411.2.12.2.433
NP0540A         VT:F:FF:::VVV::L:M:A::Y::GICI::YFR:::::VQ:VLYG:AA:::SV:::VLL
hla0947         :AE:S:::::::::::::::::I::G:::::T::TR:G:LS::V::L:::::::::::SE
HQ1444A         ::::S:AI:::A:::I:::I:::::GV::::T::TE::TI::IG::T:::I::S:Q::WT
VNG0537         :::V::::::VVL:::::V::::::::::::HV:TD:A::::V:Y:G:A:F::::T:I:T
rrnAC2578       :::::::I::::::VI::::::::::::::::A::::::G::::::F::::::::::A::
Hmu2984         :::::W:L::VFV:VV::::::::::G:::::V:::LD:W:::GL::::::::::::P::

consensus       AVYDILGLLGVSGGQTGLLADLLLRAVGLALFVALLARNR-RAADAEDPGATA-PA----
#oth            5441312.2.3223543233114..11.21213412411.11434535433324322211
NP0540A         PTESL:::::::VVLET:A::::::G::A:::IT::EKG:::EGRK:S:SEP:S:TAS::
hla0947         S:F:T:::V:::VSVNA::L::T:::::FV:::LFAL:::::TL:G:GD::GETD:TTGS
HQ1444A         LII:::T:::T:LMM::SVIE:I::GI::::::I:AT::::KD:AI-------:--::::
VNG0537         TAN:V::::::A:::::VVV::G:::I::VV:A:::V::::::ST::E:A:--:--::::
rrnAC2578       G:::::::I:IA::EMTV:L:IV::G::::::LF:M:K::Q:GG:PAVRSG::E::::::
Hmu2984         :G::VTA:::LG::SVS:T:::::::::::ML:::::K::::::PRG:S::::DA:::::

consensus       ----------
#oth            1111111111
NP0540A         ::::::::::
hla0947         TEAVAASDSS
HQ1444A         ::::::::::
VNG0537         ::::::::::
rrnAC2578       ::::::::::
Hmu2984         ::::::::::