| ||||||||||||||||||||||||||||||||||||||||
| Pairwise sequence scores | |||||||
|---|---|---|---|---|---|---|---|
| Consensus score | 3488 | hla2475 | NP0826A | HQ1680A | VNG0563 | rrnAC3531 | Hmu0999 |
| 2175 | hla2475 | 3976 | 1627 | 1742 | 1334 | 1598 | 1662 |
| 2033 | NP0826A | 1627 | 3554 | 1449 | 1270 | 1480 | 1524 |
| 2288 | HQ1680A | 1742 | 1449 | 3589 | 1480 | 1838 | 1882 |
| 1922 | VNG0563 | 1334 | 1270 | 1480 | 2718 | 1609 | 1652 |
| 2607 | rrnAC3531 | 1598 | 1480 | 1838 | 1609 | 3574 | 2490 |
| 2611 | Hmu0999 | 1662 | 1524 | 1882 | 1652 | 2490 | 3514 |
554 symbols consensus --M-D-LL--LIALPLVAAALPIAAGLRWDRAGWAIAAVTLLAQAGLAVALAWTV--ARD #oth 112434124242321233244132323543341133121343344322433244111454 hla2475 :::S:V::PVA::::::::T::::L::KY:DI::SV:::ATT:L:V::A:IGIE:::::: NP0826A MDAYSW::AVI:L:::IS:SV::::SV::KNV:::::::VVS:TFAMS:::::M:PR:E: HQ1680A :::T:A:PL::VVI::F::LF:V:L:YL:SD::::T::::A:LHL:::SVV:QQ:::INS VNG0563 ::-:-:--::---------------------------------------------::--- rrnAC3531 :::IEQ:PVL:VV::I:GG:I:L::S:VS:::::PV:T::::G:::::GL:::::::GTN Hmu0999 ::-:-:--::V::::I:GG:::LLF::FT::L::P::T::::G:TV::::::M::::VDG consensus GALSYALGGFQAPIGIELVADELSAAVLLLVAAVSLGVLAYARRAGPHGNAFYSGYLLLV #oth 243223312343121111221332332331232232332222142112433113431..2 hla2475 ::::H:::TY:P::::::::::::V:::A:::::::AT:VF::V:::R::S::::::::: NP0826A RL:AHQ:::VEV::::::F:::F:VI:::::L::C::::VFT:IG::R:::::::F:::: HQ1680A :QF:::V::::P:::::::::SVT:VLVV:ISVITILIV:::::::::Q:::::EL:::T VNG0563 --------------------------------------------------------M::: rrnAC3531 :TV:::V:::A::Y:::::V:G::G::A::::V::::::::::Q::::SGP::GL::::I Hmu0999 ::V::VP:::V::Y:::::V:G:::V::V:I:::::::::::::::::ADS::AQ::::: consensus AGLSGMTLTGDLFNLYVFLEITGLAAYALVAAGRSAAAAVAALKYLLVGTVGASLYLLGV #oth 1.22.323.1.1..11.....21122.1.11132243112.12...21..2..111...2 hla2475 G::T:LV:::::::MF:::::V:IST:::I::D::G:S:Y:S::::V::::::::::::: NP0826A G:MM:IL:::::::M::::::MAISS::::S:SKYRWSTY::F::::::::::GF::::: HQ1680A ::V::VVI:::::::::::::::::T::::::N::P:::L:SV:::::::I::::::::: VNG0563 :::::::V:A::::M:::::::::T::::::::EDSRST:::::::::::F::::F:::I rrnAC3531 :::T:::V:::V:::::::::::::::G:::S::D:S:::::::::II:::::::::::I Hmu0999 :::::::A:::V:::::::::::::::G:::S::::S:::::::::I:::I::::::::A consensus GYLLAATGTLNMADLAGKLAE-AGYDDPLVLAAFALMVGGLAIKVALFPLHTWQPDAYAS #oth 112222....1.21124213222313321231213.233..32.2.11.2.1.111.114 hla2475 ::AFL:::::::L:MQVQIV:Q:S:A:::IR:SY::IIA::GL:I:V::I:A::::::QR NP0826A ALV::S::::T:RL:PEL::A:V::T::V:V:::I::AV:::::I::::V:::LA::H:: HQ1680A :::YV::::::::::::Q:PA:V:::T:::VTG:V:LMT:::::T::::::::::N:::E VNG0563 ::AYVG::::::::::A:::D:--A:PV:AQ:::::I:V::F::::V::::::::::::G rrnAC3531 ::::::::::::::::T::G:M:A::ST:::T::G::::::TV::::::::::::::::N Hmu0999 :::::::::::::::::::::::::GST:::T::G:::::::V::::Y:::::::::::: consensus APDTVSALISALVSTVAAYALARVLFTVFTVDFLAAVPVARTALLGAAAVSIIAGSALAV #oth 1113111411...11111..23.2311.1133.32221314431343.43.231..31.2 hla2475 :::A:TTIVA:::::AS::::I::SY::::::::::NDAIT:VM:IV:GA::L::::::A NP0826A :::GI::V:::::PA::V::F:::::::Y:L::I::N::IGNL::V::LF:LF:::FF:L HQ1680A S:HS:T:Y:A:::::A::::IF:ITY::::TS:ASV::L:LD::AW:::I:V:V::V::: VNG0563 :::::::::::::::::::::L::VY:::GAG::DST::::AI:I:G:V:::V:::L::: rrnAC3531 :::::::F::::::::S::::::L::S::::E:::::::::W::V:L:C::::::::::: Hmu0999 :H::::T::::::::::::::::L::S::::G:FD:::I:Q::::TV:::::V:::L::: consensus SQSDIKRMLAYSSVSQFGLIIAGIAIANETALTGAIVHLVGHAVMKGGLFAAAGILARRT #oth 4.1321111...1.1...113112.22133.23.232113..112.21..232.431343 hla2475 M:::L:::F:::::A:::M:V:AV:L::::::L:G::::I::GLL:F:::LGV:L::LGY NP0826A L:DH::LV::::T:::::::FV:::::::::VF:::LQIF::G:V:AS::VL::MF:L:F HQ1680A V:::L:::::::::A::::::::::VM::I::::SL::::::::::A:::V:V:G::SIA VNG0563 :::E:::V::::::::::::L:A:::G:D::::::AI:::::::::::::LT::VV:TE: rrnAC3531 ::DSVQ:::::::::::::V:::F:::TPL:VV::T:::L::::::::::::T::IE:K: Hmu0999 A:::VQ:::::::::::::V:::F:VGTQV:IV::L::::::::::::::::T::VE::: consensus GA-RTLDEYAGLARRAPVTAGAFAVLALAMVGVPPAVGFAGKWYIVLGAVEAGN------ #oth .212223233131312.24231111.33211.2..21..2...1.22..22225111111 hla2475 :T::E::DL:SA::S::Y:T::I:::G:GL::I::SI::L:::::GV::::SSMGGGDPA NP0826A :GI:::K::S:V:E:::IM:::::::GI::I:L::T:::::::::A:::F:::L:::::: HQ1680A :G:Q:I:DMI::G::::IVSLG::T::F:L::::::I::::::Q::::::S::H:::::: VNG0563 :::::I::FD:::D:S::A::::G:::VS::::::T:::::::::AI::A:::S:::::: rrnAC3531 :::T:VNG:::MGS:V::S:F:::::S::::::::::::V::::::::::NTE::::::: Hmu0999 ::::R:T:::::GE::::::AGI:::LF:::::::::::V::::::V::::::T:::::: consensus -WAVVVVILASTLLTLAYFARLVERLYFAAPASVDADDEA-------------------- #oth 1132431323..11112.211321.31.34354435534522221111111111111111 hla2475 GIGIA:::FV:::F::S:V::VI::F:::GVGLS:GHG:EHGDDHGDDDHDDAHSAGPND NP0826A ::Q:SLLV:G::::SAG:ILPFIN:I::HPF---------:::::::::::::::::::: HQ1680A ::::G::AVI::M::::::L:I::::::RS:S:::EQTSDMSMN:::::::::::::::: VNG0563 :::LLA::V::::::::::L:::::MF:R:::T:P::GRS:::::::::::::::::::: rrnAC3531 :::::T:L:::::::::::::::::::::EATIHSKP::::::::::::::::::::::: Hmu0999 ::SL:::L::::::::::::::F::M::T::P:ASTT:VT:::::::::::::::::::: consensus -P-TDGGDAAAA----------------------VSTGMLAIVVIAALLAVALGFAAPAL #oth 13431.3355231111111111111111111113223224232232144222.1323444 hla2475 GVAA:::HES:TSDGDSPLTPVEGASRSRFVPDR:PSAS:::LIL:::TTI:::::GY:: NP0826A :-:-E:E:VD:::::::::::::::::::::::K:T::::IAII:G:GIGLL::::SAEI HQ1680A :MT::::::M:T:::::::::::::::::::::SI:QTTRV::TLS:IS:I:::L::SD: VNG0563 :-:-::AETP:S::::::::::::::::::::::S::::Y:T::G:TVC::::::G:FVY rrnAC3531 ::V:::SGQ:--::::::::::::::::::::::::F::I:V:::::A:::::TA:V::F Hmu0999 ::MP::::GRE::::::::::::::::::::::::::::V:V::A::::::V::GT::LV consensus EQILEPTLERLLA- #oth 44434421353342 hla2475 FEWFD:Y:TEVF:: NP0826A QAAVSTAV:::V:: HQ1680A IS::::A::VYF-: VNG0563 STQMQA::TQ::S: rrnAC3531 ::V:RE::PP::NQ Hmu0999 :::V:Q:VSTFPHP