6 genomes BUD1635 6 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC2543 - - Hmu1805 Hut2285 hla1079 NP3120A HQ1602A

Pairwise sequence scores
Consensus score	516	HQ1602A	rrnAC2543	Hmu1805	NP3120A	hla1079	Hut2285
310	HQ1602A	881	248	255	270	274	268
386	rrnAC2543	248	504	359	325	287	279
381	Hmu1805	255	359	501	364	292	274
395	NP3120A	270	325	364	545	297	288
370	hla1079	274	287	292	297	515	331
347	Hut2285	268	279	274	288	331	561

115 symbols
consensus       --------------------------------------MSDDE-PEIPIVCEDCDTRTSV
#oth            11111111111111111111111111111112222222.11122.41.12.32.2.3131
HQ1602A         MIIPLSHELLTHIIHSDTQGYELYQTASILSICTDCRR::::D::TV:V:::::G:D:R:
rrnAC2543       :::::::::::::::::::::::::::::::::::::::TT:Q:::::V:::A:G:::::
Hmu1805         :::::::::::::::::::::::::::::::::::::::T:::L:D::VI:T::::::::
NP3120A         :::::::::::::::::::::::::::::::::::::::T:EDP:::::L:SE:::::KI
hla1079         ::::::::::::::::::::::::::::::::::::::::T::::SV::::T::E:E:::
Hut2285         :::::::::::::::::::::::::::::::VAVEVPG:::::::AV::::DE:E:TAEI

consensus       PLSDVEDALARHNEQLHDGEPVAQVDPAVADELADRVAEDLGLLED---------
#oth            21311222122..133...141.1.1.32422..132.2111.333211111111
HQ1602A         S:::LRET:D::::NQ:::DD::::A:RI:N:::NV:::::D:DL:SDENEDEDE
rrnAC2543       AFE:::::V::::::::::D:::E:::D:LE:::::L:K:I::::-:::::::::
Hmu1805         AFDE::A:VE::::::::::A::::::E:MEV::::::::::::--:::::::::
NP3120A         :FPE::ATVE:::::::::::::::::::F:::::F:::::::Y::A::::::::
hla1079         :::::A::::K::DGK::::EI:E::::LK:Q:::L:::::::FDEA::::::::
Hut2285         ::::LA:Q:DA:::RM::::S::E:::D:::Q:::LI:DE:::::G:::::::::