5 genomes BUD1636 6 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi VNG1734 VNG1758 rrnAC0943 HVO_2000 Hbo1873 Hmu2230 - - - -

Pairwise sequence scores
Consensus score	664	VNG1758	Hmu2230	HVO_2000	Hbo1873	VNG1734	rrnAC0943
428	VNG1758	670	391	354	376	268	250
508	Hmu2230	391	688	420	419	284	300
530	HVO_2000	354	420	665	483	281	306
502	Hbo1873	376	419	483	626	279	302
339	VNG1734	268	284	281	279	821	406
364	rrnAC0943	250	300	306	302	406	871

118 symbols
consensus       -M-MLAALDPLEVVGLIVALIGLIPVLSQYRDETKLFTAGYVLLVVGMVATNLEALFLGD
#oth            124423313121212131112..2..232.131111.11..2..221111..2.333.25
VNG1758         ::AAIG:FGV:::::::::VL::F::V:::KES:::::V::L:::::::::::::VV:PV
Hmu2230         ::VQVWVFT:::L:::::::V:::::::::KE:::W::::::::::::::::I:::L::G
HVO_2000        :-::::D:S::::TA:A:::V:::::IT:::::::::::::::::I::::::::VF:::S
Hbo1873         :-:::GS:S::::T::V:S::::V:::T::::::::::::::::::::::::::TFA:EP
VNG1734         M:GI:EV:::PKA:LPLI:::::V::VAR::T:SRW:VV::G::A:ATL:::::NIV:::
rrnAC0943       MQTG::::::HKA:LP:::::::::::LY::RSSR::VV:::::ILAT:V::V:N::::T

consensus       VLNFVEHAIGIGLAGLVFLAAAYVRRQNVI----------------------AGEDAS
#oth            ...42..33.2121.32.12.1.3..35231112221222211111112122433354
VNG1758         :::AT::VV::::::VT::F:::Q:::GMT:::::::::::::::::::::::T::TA
Hmu2230         :::::::G::V::::::::V::::::RD::::::::::::::::::::::::MA:GQ:
HVO_2000        ::::::::F::::::AT:F::::L::K:::::::::::::::::::::::::N:G:::
Hbo1873         :::V::::::::A::V::::::::::ES:V::::::::::::::::::::::K:----
VNG1734         :::GT:::L:LMGS:IA::V:G:Y:::TIL::DPQSDDAATG:::::DAAPA:EG:DQ
rrnAC0943       :::YA::YL:LMGS:::::F::::::KQ:LADDAGGDGPEIGLEDGPDVAADG:RTEP