5 genomes BUD1663 5 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC2942 HVO_0453 Hbo1054 Hmu2888 Hut2344 - - -

Pairwise sequence scores
Consensus score	519	rrnAC2942	HVO_0453	Hbo1054	Hut2344	Hmu2888
313	rrnAC2942	573	211	208	139	178
324	HVO_0453	211	551	278	148	152
325	Hbo1054	208	278	559	164	170
259	Hut2344	139	148	164	476	181
277	Hmu2888	178	152	170	181	439

78 symbols
consensus       -----MSEEEDSGALRAALRTVTPGSRERPDSQMNSIGWLMFLGLLVLLLPLLPFAAIVW
#oth            111111323213143342111...124232132.123.132113212112.2..121222
rrnAC2942       MAASPDD:T::::R:P:P::S::::::PHR:EG:DVF::GV::::::::M:::::IV:::
HVO_0453        ::::::::DDS:SLA:K:YH::::::HM::::E:D::::T:::I:V:::V:F:::I:::Y
Hbo1054         ::::::T:::SP:T::R:Y::::::YKP::NTE:::L::A:::VMVA::V::::::VA::
Hut2344         :::::::TS::N::IEE:::::::L:T:G:NL:::VV:Y:VM:PI:F::::::::::LYI
Hmu2888         ::::::AA:T:G:S---G::::::LAN:SD:::::A::::I:A:M::VM::V::IL:LI:

consensus       VLSKLTDYLAG---PSP-
#oth            322.23331422212221
rrnAC2942       GI::V::M:T-:::::::
HVO_0453        ::::VFG::NAQRG::::
Hbo1054         AVA::L:::::RNGGTTE
Hut2344         ::::GAKA:R::::---:
Hmu2888         LVD:::N----:::---: