| ||||||||||||||||||||||||||||||||||||||||
| Pairwise sequence scores | ||||||
|---|---|---|---|---|---|---|
| Consensus score | 3747 | hla2683 | VNG0436 | rrnAC0229 | HVO_1394 | Hbo0156 |
| 2902 | hla2683 | 4409 | 2574 | 2491 | 2395 | 2479 |
| 2958 | VNG0436 | 2574 | 3816 | 2600 | 2373 | 2550 |
| 2969 | rrnAC0229 | 2491 | 2600 | 3824 | 2542 | 2589 |
| 2940 | HVO_1394 | 2395 | 2373 | 2542 | 3795 | 2827 |
| 3105 | Hbo0156 | 2479 | 2550 | 2589 | 2827 | 3719 |
619 symbols consensus ---------------------------------------------MSD------------ #oth 111111111111111111111111111111111111111112211221211111111111 hla2683 MDTEIEERSHGRRRDAGGDGRLTEQDTRVYVGRRLPSAWERHMTDP::SDPIDRTGDEPP VNG0436 :::::::::::::::::::::::::::::::::::::::::MSTDQT:G::::::::::: rrnAC0229 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HVO_1394 ::::::::::::::::::::::::::::::::::::::::::::::PE:::::::::::: Hbo0156 :::::::::::::::::::::::::::::::::::::::::::::::E:::::::::::: consensus -----------------------------TDGG-SA----GDDPDPE-IRFYGGRLASAI #oth 11111111111111111111111111111212132212222432222114.1..112.23 hla2683 DCDAPGGGGSGATDETMTAGGAANDDELV::::L::ETGT:T:SG:R::T::::KW::T: VNG0436 :::::::::::::::::::::::::::::F:::V:::::::::SE::::D::::K::::F rrnAC0229 :::::::::::::::::::::::::::::::S:DGTEIEEISG::V:A:E:::::WM:V: HVO_1394 :::::::::::::::::::::::::::::----:--::::--E::I::LS:R::::V::L Hbo0156 :::::::::::::::::::::::::::::----:--::::-LSD::D:L::::::::::V consensus PIAFFIVWAIVQSGLLGIGDTTGLVAGMLVGLIAGMFFVKGDWKDYADTIFAGMTQRVAA #oth .121.13...1...21111..1...2.1.311.4.11111.2.13..11..2...3.... hla2683 :L::::T:::F:::V::::::Q:::I:A:L:T:L:::::R::::V::::::E:::::::: VNG0436 :LV::V::::::::V:RVS:::::::::::A::F:::L:::S:AG::N:::::::::::: rrnAC0229 ::GL::L::::::::F::::::::::::::A::V::::A:::::N::N:::D:::K:::: HVO_1394 :::L::A:::F:::I::::::::::::::T:::::LL::R::::::::V::::::R:::: Hbo0156 :::::::::::::::::V:::::::V:::A:::I::L::::P::::::V::D:::E:::: consensus TAIVAWLWAGMFAETIQAGGFVDGLVWAADAANVGAALFPAATFILAALLATGIGTGYGT #oth ..1.........12.1.2.1..3..11..31221.212...21.2.11.11....1...1 hla2683 :::::::::::::D:L:V::::E::IF::::L:::::T::::A:V:CG:::::::::::A VNG0436 :::::::::::::::::T:Q::S::::::E::GI:G:V:::::::::G:::::::S:::: rrnAC0229 ::V:::::::::SN:L::::::G::::::N::D::G:::::::::::::FT::::::::A HVO_1394 ::V::::::::::::::V:::::::::::TVL:::PG::::V::L::::::::::::::: Hbo0156 :::::::::::::::::::::::::::::::V::::G::::L::L::::::::::::::: consensus AIAFTALFFPAGVLLGANPVLLFGAILSGAVFGDNLAPVSDTTIVSAVTQDADIGGVVAS #oth 11..22.1....221.1..1...1.................................... hla2683 T:::VT::::::::I::::::::A:::::::::::::::::::::::::::::::::::: VNG0436 TV:::::::::::A:::::A:::::::::::::::::::::::::::::::::::::::: rrnAC0229 :V::S:::::::I::::::::::::::::::::::::::::::::::::::::::::::: HVO_1394 :::::S:V::::L::::::::::::::::::::::::::::::::::::::::::::::: Hbo0156 :::::::V:::::V::S::::::::::::::::::::::::::::::::::::::::::: consensus RFKYAVVAAILAFAAYLIAGAAMSGA-----SLDGAAA--LSANVSPLGLVHLLSMAIVI #oth .2...21..22121..131.4323131111132324242223423313..1..21122.. hla2683 :::::IA:::P::I::::M:S:L::::::::::E:SV::::RESATA::::::F::G::: VNG0436 :::::G:::V:S:::::G:::V:D:I::::::VA:D:SAI:GS::G:T::L::::::T:: rrnAC0229 :::::::::V::L:::VF::N::::L:::::NISQQ:QDLFVQ:SE:A::L::I::LV:: HVO_1394 :V:::::::A::I::::V::FGIP:VWGGMPHV:V:GE::V::S:::W::::::DI:V:: Hbo0156 :I::::::::F:::::::::RS:AS::::::P::VGG-::V:TGG:A::::::::IG::: consensus ATAVAGRHIVEAISWGLIVAVVFNVAFGLADLSD-----MLAFKAPQNSGLAQAADALPF #oth 21.12....1..1...1221311.1211113212111112.2.31223233234442..3 hla2683 :::I::::::::::::IV:::A::I::::SSV:::::::I:::TVTE----:GRFT:::: VNG0436 G::I::::::::::::IV::F:L::V:::::V:E:::::::V:R:SDSLWI:RELSV::: rrnAC0229 V:::M::::::::::::::::::::V::::P::::::::V:L::V:ET:AA:SW:GG::I HVO_1394 :L::R::::I::V::::LL:AA::::L:A:N:V:VSAGS::L:S::::-::T::VE:::L Hbo0156 V::::::::I::V:::::TSM:L:IGLD:::A:A:::::::::::::::::V:QI::::V consensus VEAVV--VEAENAGVGGSLYAGAAGFFPLIVLVLLIVAGAQIMIRGGGFEAIQEFLLNSV #oth 32222331312232.2..2.2..3........1..1.11111.21....3...121122. hla2683 :----:::VG:T::::::::S::I::::::::T::::SM::::::::::A:::::::::: VNG0436 :::INTSP:GVTSS:::::::::Q:::::::::::::::::::::::::R:::D:::E:: rrnAC0229 A:V--:::A::::::T::I:N::::::::::::::::::SE:::::::::::::W::EN: HVO_1394 LG:::ET:P:GQV:::::V:S:::::::::::T::L::::E::RA::::D::::LVIDR: Hbo0156 IG:::VP:::G:TA:A:::::::S:::::::::::::::::V:Q:::::::::D:::::: consensus ATTVRRAELTMVLGTALVNAMITINTAAEIAIAPYIARLGERFNINGYRRANILDANTSA #oth ..2..1..2...2...31.211..............111.311...1............. hla2683 ::N:::::::::::::TI:G::::::::::::::::::I::K:::::::::::::::::: VNG0436 ::::::::::::::::F::S::::::::::::::::::::::::::S::::::::::::: rrnAC0229 ::G::K::T:::V::::::S::::::::::::::::::I:Q:Y:::S::::::::::::: HVO_1394 ::::::::T:::V:::::::TV:::::::::::::::T::K::::::::::::::::::: Hbo0156 ::::::::M:::I:::M:::::::::::::::::::RT::R::::::::::::::::::: consensus LGYIFPWGGGVLAGYAAMQGLPG--AYEWFTAAMVVNPAEVWPYVFHGWFLVAVFLLAAL #oth .......2..1.2.1321221221142311142.2.1.32.2.1.....1.12..221.2 hla2683 :::::::A::::V::QV:V:PD:::LGAQYGPE:::::I::V::::::::::I::::::I VNG0436 :::::::S::::V::::LAD::T::K:D:::RG:::D:T::V:F:::::L::G::VFS:: rrnAC0229 ::::::::::::I:F:TL:::::::Q:::::S::I:::VQ:::::::::::FG:::VS:: HVO_1394 ::::::::::L::::G:::::V:GE:TP::::E:L::::S:F:::::::::::::::::W Hbo0156 ::::::::::L:::FT:::Q::N::E:::::Q:::::::S:::::::::::::::I:::W consensus TGFGREYIPDRTSEEVSRA #oth ..1.1..22..3.11.2.2 hla2683 ::::::::::::::::::: VNG0436 ::::L:::S::E::::A:: rrnAC0229 ::::L::TT::K:KD:T:L HVO_1394 ::Y::::VS:::::::::V Hbo0156 ::Y::::V:::V::::::V