5 genomes BUD1713 5 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC2048 HVO_2663 - Hmu0548 Hut2036 hla0980 - -

Pairwise sequence scores
Consensus score	2277	Hut2036	rrnAC2048	HVO_2663	Hmu0548	hla0980
1917	Hut2036	2268	1738	1632	1723	1763
1947	rrnAC2048	1738	2252	1774	1719	1803
1920	HVO_2663	1632	1774	2272	1738	1833
1991	Hmu0548	1723	1719	1738	2271	1974
2093	hla0980	1763	1803	1833	1974	2279

294 symbols
consensus       METRPLGDTGQDSTVVTFGAIALNWLEQEGANQLVEHVLDHGVNHFDVAPTYGDAELKLG
#oth            .1..1..1..11.123...2...........1.1..1..12...................
Hut2036         :Q:::::T:::::S:::::::::::::::::D:M::L:::::::::::::::::::::::
rrnAC2048       ::::A::::::E::ML:::S::::::::::::::::L:::::::::::::::::::::::
HVO_2663        :Q::A:::::HE::IA:::::::::::::::::M:::::SK:::::::::::::::::::
Hmu0548         :::::::::::::::::::T:::::::::::D::::::::Y:::::::::::::::::::
hla0980         ::::::::::H::::M::::::::::::::::::::::::Y:::::::::::::::::::

consensus       PKLRQHREEIFLGCKTQERSYEGAWRKLDRSLDRLGVDTIDLYQVHGLEYDDELDEITAD
#oth            ....11..2..........3....211111.11...2.2.....1.....22...3..1.
Hut2036         ::::EY:::::::::::::::::::E::E:::::::::::::::::::::A::::D::::
rrnAC2048       :::::Y::N::::::::::E::::A::I::::N:::I:::::::I:::::E::::T::::
HVO_2663        ::::::::D:::::::::::::::K::::::F::::::Y:::::::::::ES::::::::
Hmu0548         :::::::::::::::::::D:::::EM:E:::::::L:S::::::::::::::::A::G:
hla0980         :::::::::::::::::::T:::::::::Q::N::::::::::::::::::E::::::G:

consensus       DGALAAFREAKEQGLIDHIGLTSHGNPGLILDAIDRIDDLESVMFPLNPVVAGKDDDEYD
#oth            1...2.1...222.11211.....12.1.11..1....1.111........21.11111.
Hut2036         ::::::::::Q:::::EN:::::::::::::::L:::::::::::::::::DA::G::::
rrnAC2048       G:::D:I::::AA:KV:::::::::::::::::::::::::T:::::::::::::G::::
HVO_2663        :::::::::::DE:K:G:::::::::::::R:::::::G::TL::::::::V::G:::H:
Hmu0548         ::::R:::::R:E:::::::::::SE:A:V::::::::::D:L:::::::::A:::GDH:
hla0980         ::::::::::::::::::M::::::D:::::::L::::::::::::::::::::::::::

consensus       YEAVLDRADAADIGTLGIKAFAGGSWPPTDELPEADRPFANWYEPVDTPDEIRERFDFAA
#oth            .11.121122221...1.....3.1..1.11.1.11..11...1..11.22.12.11111
Hut2036         :Q:::::::RE:V:::A::::::::::::A::::HR::Y::::::::::ET::D:LNYTL
rrnAC2048       :::::::CE:EG::::::::::K:::::::::A:::::Y::::::::::ED:::::::::
HVO_2663        ::G:FEA:EE:G::::::::::R:P::D:::::::::::P:::::::::N::A:::::::
Hmu0548         ::::::::H:::::::::::::A::::D::D::::::::::::R::TA:::::R::::::
hla0980         :::::A:::EKNV::::::::::::::::::::::::::::::R::TA::::::::::::

consensus       AQGLTSVVSPGDPKLVTMVLDAAARYAGMDEAAQRSLIERARHDDSPVPEQLHH
#oth            11.1111121......3.1.1.1312311.121..112.22...2.........
Hut2036         S::V::::::::::::Q:::::GD:F:EL:A:::::VR:D::::G:::::::::
rrnAC2048       :R::DTI:::::::::K::::::S:S::::::R::A:::E::::::::::::::
HVO_2663        ::::::::T:::::::A::::::T::N::::T:::::V::L:::E:::::::::
Hmu0548         S::::::::A::::::::I:E:::D:EE::::::::::::V:::::::::::::
hla0980         :::::::INA::::::::I:E:::D:D::::V::::::::V:::::::::::::