5 genomes BUD1774 5 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC1631 HVO_2007 Hbo1878 - - hla1107 NP0876A -

Pairwise sequence scores
Consensus score	1173	rrnAC1631	hla1107	NP0876A	HVO_2007	Hbo1878
733	rrnAC1631	1146	678	675	613	618
805	hla1107	678	1185	606	687	662
838	NP0876A	675	606	1160	640	716
912	HVO_2007	613	687	640	1198	782
959	Hbo1878	618	662	716	782	1309

170 symbols
consensus       --MMTRTGPWSRAEADAFLAEATVPVRLACRTPADDLWMLSLWYEW----DDGELACATS
#oth            112334212.33212241.4331..2..2....2131.11...1321122421324...1
rrnAC1631       :::V:VS:::TSE:MEQ::SAE:::L::G::::::KP:::::::RF::::V::VFE:::G
hla1107         ::-:EI::::D:ERV:E::D::R:::::G::::R:AP:IV:::FA:::::-::AIN::::
NP0876A         :::A:WN:A::K:::T:Y:EGQ:::I:::::::SGG::::::::QY::::Q::T::::::
HVO_2007        MDASDP:::::::RV:G:::D:::::::S:::::::::::::::::::DPEAS::R::::
Hbo1878         ::-:K::DH:PAD::ET::R:S:::::::::::S::::::::::::VGGE:SS::C::::

consensus       ADADVVRFLRADDDVAFEISTNDPPYRGVRGRGTATIEPDEEKTLLRSLLERYLGGTDNE
#oth            .1.11121.32213.1..1.1.2...2....2.111222.11.21.12.13..1111112
rrnAC1631       :::A::DY:DY:AS:S::::::E:::C::::N::::MTA::D::V:TE::H:::::::SP
hla1107         :S::LAD::AH::H:S::V:::E:::K::::::H::VT::AD:E::::::::::D:V::P
NP0876A         ::::::S::E:::G::::V:D:Q::::::::A::V::SS:::::::::::D::V:::::D
HVO_2007        :::::::::::R::::::::::::::::::::::::V:::A::AV::R:IT::::D::S:
Hbo1878         :::::::::::N:::::::::::::::::::::::S:::::::::::::::::::::E::

consensus       LGDRLLSPDREEVRIRIEPDRLHSWDYSGRMRDAE---------------
#oth            1132..321.3.1122.2.2.111..113..3343311111111111111
rrnAC1631       :A:Q::A:::R::::T:T:::::T::::N::----:::::::::::::::
hla1107         T:::::R:E:::I:V::::E:::::::::::GP::R::::::::::::::
NP0876A         ::NQ:::A::K:::LE::::::Y:::F:D::S:IDS::::::::::::::
HVO_2007        :AK:::::E:D::V:::R:E:V:T:::AA:::SS::::::::::::::::
Hbo1878         ::SF::DD:::::::::T:T:::::::::::::VVADEANNESNGDANDN