Home |  Text search
5 genomes BUD1778 5 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnAC2059

HVO_2011

Hbo1880

 - -

hla1709

NP2502A

 -

Pairwise sequence scores
Consensus score966 rrnAC2059 HVO_2011 Hbo1880 hla1709 NP2502A
570rrnAC2059 950 451 448 447 454
734HVO_2011 451 989 661 556 582
683Hbo1880 448 661 1021 506 544
689hla1709 447 556 506 1024 626
742NP2502A 454 582 544 626 986 

137 symbols
consensus       ---------MDEIELGVPQGIVDSLPEDDGTAAQDMRRAVEGIETRLNRAIEAAANESEA
#oth            11122223323312..1.22221...22213122.141.12.3232.12221323433.1
rrnAC2059       :::::::::::N::::I:A:::::::P:SEDTKR::EQ::G:W:RE::A:L----:TE:P
HVO_2011        :::::::MAIEPLS::::KP:I:::::A::::::::Q:::::L:::::::::D:DT::::
Hbo1880         :::MTDDTSDRR:S:::::Q:L::::::G:N::A:LK::::::::S::D:F:R:ESD:::
hla1709         LGVAGGRIG:P:::::::K:V:E::::E::::E::::::IA::QS:::DE:-:G:EPA::
NP2502A         :::::::::::::Q:::::PL:E:::D:::A:::::H::I::YNA::E:L:::::D:G::

consensus       AEAVVDAIERLEDRAERYDEFVPELRAWGQSPIYAIAWRNLQADLIAQIYEHDWLDAHID
#oth            .2222.22.22.32412111111............1...1.2122.3.122121.34313
rrnAC2059       :S::::H::QF:S:W:A:::Y:V::::::::::::M:::D:H:AV:::::D:AD::ER:N
HVO_2011        :GY::::L::::GHY::::::I::::::::::::::::::::::::L::E:Y:::KP:::
Hbo1880         :SYA:::::H::::M:T::A:::::::::::::::::::::::::::::RAY::::T::E
hla1709         ::V:A::V::M:AQ:ST:H::::::::::::::::::::::YVE::G:L:::E::GDELG
NP2502A         :::IL:LV:HF:::I::FHA:::::::::::::::::::::Y::C:E:L::::::A:QL:

consensus       RERNARLVEDGIRLGDL
#oth            ....3.1.1....3222
rrnAC2059       ::::::I:D::::P:--
HVO_2011        ::::L::::::::Y:K-
Hbo1880         ::::Y::::::::FDKR
hla1709         ::::F:::::::::S::
NP2502A         ::::::::::::::S::