Home |  Text search
5 genomes BUD1800 5 proteins
a Hsa
Halobacterium
sp. NRC-1
b Hma
Haloarcula
marismortui
f Hvo
Haloferax
volcanii
g Hbo
Halogeometricum
borinquense
h Hmu
Halomicrobium
mukohataei
i Hut
Halorhabdus
utahensis
j Hla
Halorubrum
lacusprofundi
q Nph
Natronomonas
pharaonis
x Hwa
Haloquadratum
walsbyi
-

rrnAC3330

- -

Hmu1009

Hut0607

hla2416

NP4560A

-

Pairwise sequence scores
Consensus score1805 Hut0607 rrnAC3330 Hmu1009 hla2416 NP4560A
1284Hut0607 1855 1022 1060 877 955
1411rrnAC3330 1022 1850 1296 868 982
1371Hmu1009 1060 1296 1809 865 948
1121hla2416 877 868 865 1912 991
1217NP4560A 955 982 948 991 1860

273 symbols
consensus       --MSAGSQ-GLVEGIRIDLKRLHETWMELVYPRQRNANDTVLGKWTPDSRVGLALYRLWA
#oth            11.141333.2.21122.22.......11.1...132433...1.2.31332423.1..2
Hut0607         MY::G:TAP:::A:::::::::::::::V::::::::E:::::::::N::R:WIT::::G
rrnAC3330       ::::T:::::V:G::::::N:::::::::::::::::::::::T:::::A::M::::::S
Hmu1009         :::::::EQ:I:G:::::I::::::::A:::::::ATDES:::::::::QL::::::::S
hla2416         :::ERRG:I::::ALLL:VV::::::::V:F:::LDP-SA:::::K:E:S:QTVG:Y:::
NP4560A         ::::D:--:::::::KV:VV::::::::::F::::T:VHE:::::Q:RT:GDKIK:::::

consensus       ALGAPLVALLYPLVLLGFALRFQTRRIDSAAARLGVLGVVVLSVLLWGGLTALARFQ---
#oth            13.2121113...1.2.323.2211131212112.22.11213212..2.3111122111
Hut0607         :I::LA:G:::::::::YVF:A::::::L::::I:A:::F:VL:V:::A:S:F::Y::::
rrnAC3330       :::V:VI::V:::::C:VV::Y::::::GT:T::::V:::L::::A::::A:::::EPGS
Hmu1009         :V:L:V:::T:::::::AF:::::::V::T:T::::V::::::::V::::I::::Y::::
hla2416         IF::::::VA:::L:V:::T:YYAAKL:::V::F::::A:IVATVV::S::L::H:::::
NP4560A         :::V:::::::::L:V:::A::TA::FN::R:H::LA:::::TA:::::::::S:LR:::

consensus       --LATEGFIAVAAASVVATLSAALAAGFRRVGGRGTTVALAYPFAMTAIFLPPVVAALYS
#oth            2213221341122.13..22112..241213...311.421...111.21....1...22
Hut0607         ::FS:S:::::V::::::IIAGI::YV:S:L:::V:::V:::::GV::LL::::I:::::
rrnAC3330       ID:VSG::T:::V:GG:::::::::VT:::::::::::::::::::::::::::::::::
Hmu1009         LA:::G:IV::::::L:::V:::::VLT::A:::AV::FVS:::GV::::::::::::F:
hla2416         :::P::VMLGIGG:::::VVA:G:::::SK::::FVS:L:::::::::::::::::::LT
NP4560A         ::::F::SM::G:::A::V:::::::I:IKI:::::::IF::::::N:V::::::::::D

consensus       PSLADVVIPQSDSLARWILDTVLAVYGINEFLRANFDLE---------GIAHVIMWFGIS
#oth            1221331233.231111212211223.231211431212111111111.212121.21.1
Hut0607         :T::ESIFS::EAV::::N::::D:::::DR::RTY::R:::::::::::::AA::::::
rrnAC3330       TTV:S::::A::::S::F:YE:::TV:VA::FIE:::R:::::::::::::Y::I:L:::
Hmu1009         :AV::A:::L:::::::L:F::MDPL:AG:::::::ER:::::::::::A::A:I::A::
hla2416         ::IS::ILDP:YE::::::::F:::G::::T::GA:::NTFGQQWGVT:LGY:L::V:::
NP4560A         :::SG-:LE::ET::IFL::N::N::::D::::Q-:S:::::::::::::GV:L::V::A

consensus       IPLGWLLGILVTLADLVRPTR------------
#oth            2.1..2..31.1..121..34221111111111
Hut0607         ::V::::::V::::NY:::G:::::::::::::
rrnAC3330       :::::V::L::::::F::::E::::::::::::
Hmu1009         V:::::::::::::::::::-::::::::::::
hla2416         V::::F::V::A::N:I::KPDG::::::::::
NP4560A         T::::F::FV::::::I::RSSDTDEESAEEAA