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5 genomes BUD1815 5 proteins
a Hsa
Halobacterium
sp. NRC-1
b Hma
Haloarcula
marismortui
f Hvo
Haloferax
volcanii
g Hbo
Halogeometricum
borinquense
h Hmu
Halomicrobium
mukohataei
i Hut
Halorhabdus
utahensis
j Hla
Halorubrum
lacusprofundi
q Nph
Natronomonas
pharaonis
x Hwa
Haloquadratum
walsbyi
-

rrnAC2742

HVO_0294

Hbo1188

Hmu2842

- - -

HQ3261A

Pairwise sequence scores
Consensus score2520 HQ3261A HVO_0294 Hbo1188 rrnAC2742 Hmu2842
1483HQ3261A 2838 1253 1352 1236 1221
1933HVO_0294 1253 2535 1729 1484 1599
2003Hbo1188 1352 1729 2598 1545 1593
1906rrnAC2742 1236 1484 1545 2519 1747
1985Hmu2842 1221 1599 1593 1747 2533

382 symbols
consensus       ---------MDRPIVALVLAGGTGTRLYPASRADRPKQFLSLGGDRSLLARTVSRA-GFA
#oth            11112222212112.11.....1.1.......211....11121.2.1.211.3.21211
HQ3261A         MAVSDSTSSTVVDV:GV:::::I:S:::::::GH::::::::F::::F:T:::D:LR:VT
HVO_0294        :::::::::::::L::::::::::::::::::S:::::::P:::::::::E::A:::D::
Hbo1188         ::::VVAGQT:::V::::::::::S:::::::::::::::::L::D:::S::::::R:V:
rrnAC2742       ::::::::::E:::::::::::::::::::::S::::::::F:E:E::::E::::V::::
Hmu2842         ::::::::::E:::::::::::::::::::::::Q::::Q:F:::::::T:A:E:V:S::

consensus       DETYVLTRDAFADAVREHAPDAAVLTEPAAKDTGPALVYATHRIREQVGDCVVVAL-PSD
#oth            .32311..21.114131111212.21..221.....12..1.1121211.2111311...
HQ3261A         :TILI:::::::ET:::QVS:VT:I:::VGR:::::AL::::YVE:TY::DA::L:A:::
HVO_0294        :HVV:S::P::T:DIAD:::::E:VV::::::::::::::::::AASYD:P:::V:::::
Hbo1188         :DVF:S::P::::EIS::::::E:VV::::::::::::::::::::T:::::::::::::
rrnAC2742       :::::::::S:::G::::V:NV::::::EP:::::::A::A:::::::::::LLC:::::
Hmu2842         ::::::::E::::::HD:::E::::::::P::::::::::A:::::::::::LL:V::::

consensus       HVVGDGFAAVMRRAARVAVETEGLVTFGVEPTRPETGYGYIEPGASRN----------DY
#oth            .31123.2213122221.32.32..12.11.1..21....11.12223111111111123
HQ3261A         ::::AA:DTAV::MSA::MN:NR:::L::A:::::::::::::A:TI:SINGLNDNAVSW
HVO_0294        :H::::::EA:TSG::::AD:DS::A:::::::::::::::::::D:D:::::::::::A
Hbo1188         :T:::S:::::::G::::D::GS:::::::::::D:::::::::E::G::::::::::::
rrnAC2742       :RISGP:ET:A:T:T:::::::::::V:I::D::A::::::K::P:E:::::::::::GF
Hmu2842         :::::::E::G::::HT:::::::::V::::::::P::::V:::E::E::::::::::G:

consensus       APVAAFHEKPDAETATEYVDAGHYWNAGIFAWTPEALLSAARDSPLSPLVDALDDG-DPD
#oth            33243.....12...32.123.31....2...2.311221.12...111222.3221232
HQ3261A         KSIQS:::::EV:::KK:IE::::::::::::R:AVFNTV:A::::A::QT::QNNTSES
HVO_0294        RDL::::::::::::AR:::Q:YL::::M::::::::F:::::::::::L::::::::A:
Hbo1188         :::S:::::::::::H:::E::::::::::::::D:::A::::::::D::TD:T::T::E
rrnAC2742       :::ET::::::R:::::::RE:F:::::L:::A:T::::::AS:::A:M:ER::::::H:
Hmu2842         ET:RQ::::::R::::::::R:C:::::M:::::::::::::A::::D:::::ERD:E:E

consensus       --RAFAAVDPVSIDYAVLERAEDAAVVPADFEWDDLGSWDAFDRVLDADE----------
#oth            1122.111231.1.1112.221322...1223...1.2...12.3222231111111111
HQ3261A         VADV:::S:SQ:V:R:IF:QS:AT::::T:MM:::I:T::::::LATQ::LITENINTQT
HVO_0294        ::AG::::EG:::::::M:::A:::::::::::::::::::LE:IV::::::::::::::
Hbo1188         :::::DG:AE:::::G:M::T:::V::::P:::::::::::::::V:GNA::::::::::
rrnAC2742       ::D::::::::::::::::D::N:F::::ALD::::::::::E::::GQ-::::::::::
Hmu2842         :::G:D::::::V:::::::::GVF::::::A:::::A:::LA:H:P::D::::::::::

consensus       -------------DGNVVLGDAVV--IDAADNVVAGDG-HVSLVGVSDLAVVSWDDRTLV
#oth            1111111111111211131.1232232.121.121211311.2...11.211222..1..
HQ3261A         ASAEDEHSDTTTREET:TV::VE:EM::ST::IIV:N:S:I:T::::G:II:T:N:::::
HVO_0294        :::::::::::::::::A:::DP::FV::::::::T::AT::::::::::::A:G::V::
Hbo1188         :::::::::::::N:T:SV::VT:REL::::::::::DK:::::::::::::T::::V::
rrnAC2742       ::::::::::::::::A:::E::S:::::DG::L:S::::I:A:::E::V:A:F::::::
Hmu2842         ::::::::::::::::A::::::T::V::::::::T:::::::::::::V:A:YG:::::

consensus       VPKEEAQRVREVVSRLRDRGAF
#oth            .11121.3..11.31.13424.
HQ3261A         :N:DD::S:::L:::::ES:L:
HVO_0294        :::::::K::::::::KRKEM:
Hbo1188         ::::R::D::TL:DE:KQ::E:
rrnAC2742       :::::::::::::GE:::D:R:
Hmu2842         ::AD:S:::::::A::::ED::