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5 genomes BUD1816 5 proteins
a Hsa
Halobacterium
sp. NRC-1
b Hma
Haloarcula
marismortui
f Hvo
Haloferax
volcanii
g Hbo
Halogeometricum
borinquense
h Hmu
Halomicrobium
mukohataei
i Hut
Halorhabdus
utahensis
j Hla
Halorubrum
lacusprofundi
q Nph
Natronomonas
pharaonis
x Hwa
Haloquadratum
walsbyi
-

rrnAC1221

HVO_1258

Hbo0290

Hmu2507

- - -

HQ1751A

Pairwise sequence scores
Consensus score2297 HQ1751A HVO_1258 Hbo0290 rrnAC1221 Hmu2507
1079HQ1751A 2867 723 800 786 805
1124HVO_1258 723 2210 835 853 783
1265Hbo0290 800 835 2682 1005 954
1863rrnAC1221 786 853 1005 2329 1874
1818Hmu2507 805 783 954 1874 2301

428 symbols
consensus       ------------------------------------MDSPDTDTGDES----------GE
#oth            111111111111111111111222222222222233323312333232111111111112
HQ1751A         :::::::::::::::::::::MTDNNHSPVDDDQNTDE:E:EQ:DP::SQFDPDPFGI::
HVO_1258        ::::::::::::::::::::::::::::::::::MSETT::DAAA::R:::::::::::-
Hbo0290         VMTEANDEREFDADSGFDWTVESKDGAGDAATAVSNG::DE::GS:D:::::::::::N:
rrnAC1221       ::::::::::::::::::::::::::::::::::::::K:::NI:ENG::::::::::::
Hmu2507         ::::::::::::::::::::::::::::::::::::::GL:::::ER::::::::::::Q

consensus       VPPDE--------------------------------------------------ERATA
#oth            22.222222222111111111111111111111111111111112212212222232233
HQ1751A         :::::SVDTDALTRTTVDETANKSANPDVNAPTGGVSENGNNKLTDEVSAEQSRGGIE:Q
HVO_1258        -S::D::::::::::::::::::::::::::::::::::::::::::::::::::AG:AR
Hbo0290         :T:::AETAAGE::::::::::::::::::::::::::::::::ANEATANETAAD:D:S
rrnAC1221       E::ES:::::::::::::::::::::::::::::::::::::::::::::::::::::Q:
Hmu2507         -::T:::::::::::::::::::::::::::::::::::::::::::::::::::::ER:

consensus       RERMAAAIAEVRREGKKAAFVYAVVDAALVALLANIALRVLS-PAELPTRVSVPAAVT-P
#oth            222122.21.1.2.13.1.111121..2222.12.1412323113211322121313232
HQ1751A         QQQIKR:L::I:K::F:I:V::::::::I:T::I::I:LFVGI:LGM:S::PI:S:IVTI
HVO_1258        ::E::D:VS:::::AA:::V:SS:::::VAT::::V:F::V-:--:::V:S::SLGF-:-
Hbo0290         TAQ:R:::S::::::R:I::L::LL::G::::AV::G::LFR::DA:GGAL:L:G::-:-
rrnAC1221       :::::::::::::::::::::::I:::V:LF::V::L:T::::::::::Q::::::::D:
Hmu2507         ::::::::::::Y::::::::::::::V:::::::VV:TA:::::G::::::::::M:E:

consensus       --AAVGRSIPALSIPTGAVLGIAIGLLWLVAEYLIRVRRPLVEQFEAANPNVTEALRTAR
#oth            332332222113133312221212.323332.22213.2.1.1..121.121312.1...
HQ1751A         LRDTIAIT:TEPT:A::::::VG::::IIPI:VG::I:::::D::A::::SLQ:S:Q:::
HVO_1258        ::--LP:VD::V:VHV:VP:AL:V:::VG::::::LM:V:A:::::EV::S:A:::::::
Hbo0290         :::GA:GVV::-T:YGSTIA:LG::I:TF:::FSF:T:::::::::T:::A:R:E:::::
rrnAC1221       VE::::::V::::F:::::V:::::VC::IG:::Y:::Q::::::::::A:::D::::::
Hmu2507         IG:::::::::::L:A:::V:::L:GG::LG:::Y:::Q::::::::::A:::D::::::

consensus       DAVED----NADTRMAARLYEDVLAGLRQSSSVALVDSRRLAGTLVVVLLLSLATVQVAV
#oth            .32111111232121232..1...32.212..32.232..22212122321.211111.1
HQ1751A         ::T:A:::::QQSAIVK:::D:::K::N:A::IG:INF::V:TAV:ILMI::G::::L::
HVO_1258        :L:A:DGNP:R:S::SVA::D::::R::E::::E:LPT::IV:A:L:A::::AGSI:::I
Hbo0290         :SI::::::GT::E::RH::::::GD::ET::LE::GT::VVV:SLL:VVV:::SIH:::
rrnAC1221       :T:::::::E:E::::::::::::D::K:::::::::::::L::::::I:::::::::::
Hmu2507         :::::::::G:E:::::::::::::::K::::T:::::::::::::::::V:::::::::

consensus       VDI----SLDDRDPAETESPNGDRPD-EYEG--LEDGDAILGDSEDVQAGDENLNAEIDG
#oth            1121111312231322332232.3123213211.21.22....312131.31321.2132
HQ1751A         ::L:::::::EFGADSAVTVA:::EET::S::::KN:SS::::ETSIRE:QQTQ::T:ST
HVO_1258        S::::::QFE--GL:GETT:S::L::ASDDETR:QN:SS::::P:::A::S:Q:::TVA:
Hbo0290         :GLDLSQTF::G:Q:GSLQ::P:E::R:D:D::::::EQ::::A:NIS::::SI::SVQ:
rrnAC1221       :::::::G:L::::V::::::-:::S:Q::::::::::::::::::::::::::T::::S
Hmu2507         ::V::::::L::::V::::TD-:G:::::G::::::::::::::::::::E:::T::::S

consensus       TGGDEEGDRSQS-PPSAYDGPGF-ADGAVDSQQAGFAGQEAVEDAALIREYNLRIRDNDD
#oth            1.1222322233122221232.212232.2111.1123314212.2.1.1.1.3..1322
HQ1751A         S:S:GG:NADRD:S:T::TNS:::SAED:QT:::A:DSN:::QN:::::::::A::::S:
HVO_1258        :::SGD::GPE::AAA:::ST:YGG:S::E::R::YLADDTL:E:D:::D:T:E::E:E:
Hbo0290         ::SG:GTSG:TA::::S::DS:::::A::E:::::Y:ES:N::::E:::::::K:::E::
rrnAC1221       ::::::I:::::F:S:DTE:::S:GS:T::::::::::::D::::D:::::::::::Q:T
Hmu2507         ::::Q:V::::EF:S:DT::::S::S:T:::R::::::::EI:::::V::::::::ER:A

consensus       DDDDTD--
#oth            22321231
HQ1751A         QT:T:ASS
HVO_1258        E-----::
Hbo0290         E::T--::
rrnAC1221       ::E:::P:
Hmu2507         ::G:::Q: