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[R] (-) COG5524 Bacteriorhodopsin
5 genomes BUD1830 7 proteins
a Hsa
Halobacterium
sp. NRC-1
b Hma
Haloarcula
marismortui
f Hvo
Haloferax
volcanii
g Hbo
Halogeometricum
borinquense
h Hmu
Halomicrobium
mukohataei
i Hut
Halorhabdus
utahensis
j Hla
Halorubrum
lacusprofundi
q Nph
Natronomonas
pharaonis
x Hwa
Haloquadratum
walsbyi

VNG1467

rrnAC2030

rrnAC3161

- -

Hmu2589

Hut1004

- -

HQ1014A

HQ1017A

Pairwise sequence scores
Consensus score1778 HQ1017A Hut1004 rrnAC3161 Hmu2589 VNG1467 rrnAC2030 HQ1014A
961HQ1017A 1827 685 816 724 789 807 784
1105Hut1004 685 1735 1096 1111 766 784 781
1323rrnAC3161 816 1096 1895 1321 913 884 924
1298Hmu2589 724 1111 1321 1707 877 884 839
1094VNG1467 789 766 913 877 1962 899 938
1260rrnAC2030 807 784 884 884 899 1845 1517
1226HQ1014A 784 781 924 839 938 1517 1870

280 symbols
consensus       ---------------MLGPEGEGIWLALGTAGMLLGMLYFIARGWGVQDPRRQKFYIITI
#oth            11111122323223234333313211221132141111..313.3323.322221.22.1
HQ1017A         ::::::::::::::::AT:GS:AT::WI::I::V::TV::AV::R:ST::EQ:TY::::T
Hut1004         :::::::::::::::---------------------::::::T::N:R:S::K:::VV:T
rrnAC3161       ::::::::::::::::PA:GS:::::W::::::F::::::::::::ET:G:::::::A::
Hmu2589         :::::::::::::::-----------------:F:::::::::::S:S:Q:::::::A::
VNG1467         MLELLPTAVEGVSQAQITGRP:W::::::::L:G::T:::LVK:M::S::DAK:::A::T
rrnAC2030       ::::::::MLPLQVSS::V:::::::::::V::::::V::M:K::D::::EQEE::V:::
HQ1014A         ::::::MSQLALQMSS::V:::::::::::I:::::::::::D:LD:::::QKE::V:::

consensus       LIAAIAFVNYLSMALGFGLTEIEL----------GGEVIDIYWARYADWLFTTPLLLLDL
#oth            2121..133..1.22.2.22522341111111112123531..1..1..11.....12.1
HQ1017A         ::P:::AAA::A::T:L:VISMPIR::::::::::T::::::::::::::L:::::II::
Hut1004         F::::::::::A::T:::KLP::VIENILGTEFGS:VPEE:::P::T::IL::::::Y:I
rrnAC3161       ::T::::::::A::::::::F::F:::::::::::::QHP::::::T::::::::::Y::
Hmu2589         M:::::::::::::::::V:T::::::::::::::::ERA::::::T::::::::::Y::
VNG1467         :VP::::TM::::L::Y:::MVPF:::::::::::::QNP::::::::::::::::::::
rrnAC2030       :::G::ASS::::FF::::::V::V:::::::::N:R:::V::::::::::::::::::I
HQ1014A         ::P:::AAS::::FF::::::VS:A:::::::::N:R:V:V::::::::::::::::::I

consensus       ALLAGADRNTIYSLVGIDALMIGTGLVATL-------LKVGVARIVWWGISTAALLVLLY
#oth            1.111.2331243.132.22..21.221213222121342533.321.21..222232..
HQ1017A         ::V:::RKQ:L:K:II:::I::LG::AGSMM::::::QQGA:I:::::AV::::FII:::
Hut1004         :::::::::::ST:::L:V:::L::V::::TFTGGAG:E:EG:::L:::V::GF::::::
rrnAC3161       G::::::::::::::SL:V::::::V::::SAGSGV::SA:AE:L::::::::F::::::
Hmu2589         ::::::::::::::::L:V::::::AL:::SAGSGV::PA:AE:L:::::::GF::::::
VNG1467         :::VD::QG::LA:::A:GI:::::::GA::::::::T::YSY:F:::A:::::M:YI::
rrnAC2030       G:::::SNRDMA::IT:::F::V:::A::::::::::M::P:::YAF:T:::I:M:FV::
HQ1014A         G:::::SQRD:GA::::::F::V::::::::::::::T::V:::YAF:T:::ISMVF:::

consensus       FLFSVLTERASDLSADTQSTFNTLRNIILVLWAVYPVAWLVGT-EGLGLVGLGIETALFM
#oth            2.245224214333413322.24...32313.23..13.12.111.21222253.12212
HQ1017A         Y:LGE:S:::RSR::E:GIV::R::::T:G:::L::IV:IL::GG:F:IIAVTT:IM:YV
Hut1004         ::::T::AK:NE::::::R::KL:::M:A:::L::::W:II:::::::AI:I:P:::G:A
rrnAC3161       ::::S:SG:VAN:PS::R:::K::::LVT:V:L::::W::::S::::::::I:::::G::
Hmu2589         ::::N::D:::E::G:L::K:S::::LV::::L::::L::::::::::::::P::::A::
VNG1467         V::FGF:SK:ESMRPEVA:::KV:::VTV:::SA:::V::I:S:::A:I:P:N:::L:::
rrnAC2030       Y:VV:VG:A:::A:EEA:::::V:::::::A::I::::::::::::::::::FG::L:::
HQ1014A         Y:VA:FG:AV::ADE::R::::A:::::::T::I:::::::::::::A:T::YG::L:::

consensus       VLDLTAKVGFGIILLRSRAVLDEASAPSPSAAAAA-----
#oth            21.231.11..31..2.22132223422423565332111
HQ1017A         M::IGT:I:::AV::E:QD::QA::H::STNDIKSH::::
Hut1004         :::V::::I::::::::HD::::GA-::A:-----:::::
rrnAC3161       :I::V::::::::::::HG:::G:AETTGTG:TP:DD:::
Hmu2589         :::::::I:::::::Q:H:::::GQTA:EG::V:D:::::
VNG1467         :::VS::::::L:::::::IFG::E::E:::GDG:AATSD
rrnAC2030       I::::::I:::F:::::::IVGGD:::T:::E::D:::::
HQ1014A         ::::V::::::F:::::::IMGGG:E:T:::QET:AD:::