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5 genomes BUD1833 5 proteins
a Hsa
Halobacterium
sp. NRC-1
b Hma
Haloarcula
marismortui
f Hvo
Haloferax
volcanii
g Hbo
Halogeometricum
borinquense
h Hmu
Halomicrobium
mukohataei
i Hut
Halorhabdus
utahensis
j Hla
Halorubrum
lacusprofundi
q Nph
Natronomonas
pharaonis
x Hwa
Haloquadratum
walsbyi
-

rrnB0067

HVO_B0354

-

Hmu1435

Hut2772

- -

HQ1921A

Pairwise sequence scores
Consensus score5527 rrnB0067 HVO_B0354 HQ1921A Hmu1435 Hut2772
3370rrnB0067 5878 3135 1735 1580 1615
3357HVO_B0354 3135 5967 1706 1672 1610
2880HQ1921A 1735 1706 5525 1919 1972
2964Hmu1435 1580 1672 1919 5323 1993
3097Hut2772 1615 1610 1972 1993 5620

789 symbols
consensus       ----------PSSNNCRYTFDPSNQTDAALTTTWECPHEAHAESERCVFHMSRAERASLD
#oth            111111223322244242323234433342333131.12123133312112122..231.
rrnB0067        ::::::MSSV:DAET:S:R:::::E:::YIE::::::::S::::DN:I::::::::R:::
HVO_B0354       MSRNESTPALM::SS::::::::V::::H:Q::::::::::P:::F:::::::D::::::
HQ1921A         ::::::::::---M::Q::AT:EKSQFSS::AM:S::::S:Q:G:H:::::TPE::RHH:
Hmu1435         ::::::::::-------------------------M:ET:ISD-S:ALLER:PD::EA::
Hut2772         ::::::::VT::::DSTCA:VLKDTSTP:::GP:H:::D:L:DQK:::::HTA::::E::

consensus       ITDDDIVDTLRANLESGDPRRNEFVGADLPALDLDYQDIDGDNNHLLNFRHADIEG-LDA
#oth            12222133313231323132422221121.412112322231211212111221323322
rrnB0067        V::::::Q:::E::T:Q:::S::Y::::::TMS:T::Q:::AT::::::Q::::AA:::I
HVO_B0354       V:G:::::E:::::Q:P:T:V::Y::::::H:S:T::::N:AT::V:::Q:::::::::L
HQ1921A         ::PQ::HA::LSE::AEANDKK::I::HI:Y:::::I:VET::QYP:D:::TT:KNGIS:
Hmu1435         :G::EVL:A:FSVI:R::QEEKVLSDCT::::N::FRTVES::::PVV::NCTF::AVS:
Hut2772         :A:EAVREHFE:A:G::::E:RA::::T::S::F:HL:F:H:DQ:::DL:::C:H:DFV:

consensus       THARFEQGIDLRNATIGGLELDGARFEDDLEASAVTVTGDVDADEATFNGD-VRFSGATF
#oth            321233232311222213.2113242322232343112131223112.43211212221.
rrnB0067        ::GHIA:::N::E::::S:K::D:ILSGI:::T:::::DEFS:N:T::HE::::::Q:H:
HVO_B0354       ::G:LD::LI::E::VDR:K::E:VVTG:VD:RE:::::A:T::::::EQ::::::::::
HQ1921A         A:::::ERV::::S:V:::HAPNCE:::G:L::KAVF:DV:TLS:TV::::T:D:TDT::
Hmu1435         VD:DVTVP:SFE:CD::::::P:::::F:::L:DS::S:::::F::R:DDQ:FDVT:S::
Hut2772         SY::::EAV:::D:KL:T:::::GT:H:GFFCKRT:FE::::C:R:::S:H::A:D::::

consensus       EGPVRCDEATFGNDASFEDASFRGRASFRNAAFRGSSHELDDNISFAGATFEDAASFRQA
#oth            3131322123134123.32.2.41322.3234221323322.222.23.2.22413.321
rrnB0067        H:R:D::::I:DE:T::R::::T:ET::::ITA:::::::::H::::::H::S::L:NR:
HVO_B0354       R:E:::::TV:QG:T::A::T:H:T:R:::VETS::::V:E:H:T::D:::R:D::::::
HQ1921A         :QSLV:E:I:VAV:LF::H:E:N::V::DG:W:AEQASTI:::TI:NH:I:H:I:::KHT
Hmu1435         T:::TLQ::H:::::D::R:::EESV::ET:S:S:A:N::G::A::EE::::GEVD::::
Hut2772         :::::F:Q::::DP:T:D::T::E::T:LGS::::RGIDV::YT::E::::::VVR:DHT

consensus       AFEYATFADTRFADAVTFEEATFTGDVRFDRATFRSAADFDEATFEDDASFADVTFDGRA
#oth            313223.3223142433.322223223213232.433.1.1133132.22.331213141
rrnB0067        :V:C::::::Q:D:DA::TH:I:GD:TT:ATTE::RS:T:N::::NE::T:T:::V::::
HVO_B0354       L:D:V::DGA::TAGSD::HVE:E::A:::GVR:NEM::::::R:D::::::NAR:MQL:
HQ1921A         S:Y:TA:Q:VT:Y:MT::KQ::AN:TI:LNGS::HA::::::LHC:E:I::G::V:H:K:
Hmu1435         ::T::D:::VSV:GR:G:::T::::::A:T::::Q:E:::::VD:GG:VD:ES:::E:T:
Hut2772         H::A:S:EA:::S:::H:D:::T:AP::::::::E:::T::GS:::::::::AA::::ET

consensus       NFRGVEFNGGARTLEDDATFSNARFAGEADFELARFRYADFEDATFNGAANFDRATFD--
#oth            3...2212..222222.3313323.4323322313113431322212142312233.411
rrnB0067        ::::T::::::::V:::IA:D::H:R:D:::K:::::::::SET::D:RL:L:::E:EAR
HVO_B0354       E:::::::::S::TH::V::EG:T:E::::YK::::::S::K::V:K::VS::::::TAR
HQ1921A         F::::SVI:::DV:A::FSLA:T::NA:TT::RGT:GFTNA:::K::ACV::E:S::S::
Hmu1435         V:::A::E::::S::E:::::Q:V:DD:LNARD:H::DGL:DGI:V::P:T:EGIR::::
Hut2772         :::::T:E::GTV:HR::D::EV:::RAVS::SGDIGAVT:::T::D:D:R:HDVL:Q::

consensus       ------------------------------------------ADASFEAATFADEADFDE
#oth            21122221212221221212222222122122212121221241.1.2121.22313.11
rrnB0067        VDCHDMHVLGDLCLDRAVFSDPVHAHDATFEGSVSAFETEFY:::D:VN:::GGP:T:::
HVO_B0354       TDCYRLRVDGAFDLSLASFGGQANFDDSEFHDAVVAEEATFGS::::::VE:QSN:R:G:
HQ1921A         ::::::::::::::::::::::::::::::::::::::::::D::D:VNT::::T:::::
Hmu1435         ::::::::::::::::::::::::::::::::::::::::::G::::::::::::V::::
Hut2772         ::::::::::::::::::::::::::::::::::::::::::ER:::Q:::::G::V::A

consensus       ARFDEDVSFEAATFDGDASFRGAEFEGEANHLEANASFNEATFEARANFEDANFTSASFW
#oth            12.221.3.3421.324.3.2.12.3.3422213212.2212.234.4.33142213112
rrnB0067        V::H:::::KR:::KSE:::V::L:::::KS::D::T:E::V::TN:T:RE:T::NL:L:
HVO_B0354       :::E:::R:N::::R:L::::::F:Q::LQ:::::::::G:::::G:E::A:::::::::
HQ1921A         VI::G::A:TNT:::A::V::::::N:GT:YI:SD:V::NV::TQK:D:S:TDIV:IE:N
Hmu1435         ::::G:::::QVS:::V:I::::::R:AD::::ED:::DG:::::::G::::V:S:G::V
Hut2772         :T::DE:T::G:::E:P:N:P:V::::SN::DS:SVT:D:VR:SGD:::HH:WC::::::

consensus       DTRFAAEADFTGAKFTETARIRVHVNDDDTYLDFTDATIADGEIVQPDGGWVRYDLTRAT
#oth            213.34321.13132133342324343313121.12.3142.2.3113223321.1.4.1
rrnB0067        :::::V:V:::::TV:GEVH::L:AL:::I:MN:VS:S:SG:Q::E:GDSNIPF:F:E::
HVO_B0354       E:T:HDR:::RQSD:-::::F::L:G:R::::::::::LDG:T:S:GS:EPTP:::::::
HQ1921A         R:E:QSDV:::D:EI:::FI:ENP:FV::P:::::::::EE:T:M:::R::GHF:F:Q::
Hmu1435         :::::::T::R::::-DR:VFH:VPITNES:V:::R:I:K::::R::E:::::::::N:S
Hut2772         EVS:EHA:C::E::::KHLDLK:SE:GG::VVN::::VL:::::::::::G::::::I::

consensus       VGDVQLSAENGSDHRQLLDYFRFCDTEFD-----RFDFSAHHDYLDRNDWVLHDFDGNGA
#oth            2.21413324232322.1121...3.2.2111114...12.341.2.11.31.2.33232
rrnB0067        ::N:::GS::::--GE:::Q::::R:D:::::::H::::D::S::E:::::::E:S::N:
HVO_B0354       I::LT:--:G:GNEH::::H::::L::::::::::::::D::G::E::::TI:::V::::
HQ1921A         ::::L:T:ADQV:R:E::::::::::T:::::::T::::Q:LE:::::N::::T:AHPET
Hmu1435         ::S:S:::TTE:::::::::::::N:::NEFDGYD::::::T::::::::S::E::E:F:
Hut2772         L:S:GF:V:S:A-::D:FQ:V:::::T:E:::::N:::T::AHF:T:S::R:::::DD:L

consensus       EGTFAVEMTPDNIEETYRKAKTSASAAGNTKASGEFRFKRQQYARRKNLDIARDE-AEDA
#oth            23321111.1331.2..21.221.1321232.111.121.2211.212431121312224
rrnB0067        T:D:S::::::V::::::::M:::NDV:D:P::R::EY::FH:N:::::SLI:::YSL::
HVO_B0354       T:Q::::L:::I::::::::QD::N:V:D:P::R::E:::YY:N:Q::F::ILN:YSLNT
HQ1921A         :F:P:L:L::AR::K::L:::S::::QS:I::A::::V:::::::::FTQ::A:S:::PI
Hmu1435         DV:::LP:::E:V:R::L::::A::S::QM::A::::VR:::F::K:YVG::::G:TT:L
Hut2772         :YEY:::::SL:V:K::QR::::::T:::VE:::K:::::::F:::NYK:::::P:::PF

consensus       RTRAKNGARVAENLFLQFTCGYGNRLPRIAAVFILLPLLPAILYAFGGP-FETGAGQVHS
#oth            311211231221.321231..1.2..2..2131212.2331211211.1313.3113243
rrnB0067        T:K::K::S:VL:RVM:::::::::::::::LTF::::VYG:::VL::::L:::::V:WN
HVO_B0354       WA:G:KV:S:GL:TLM:V:::::::::::::FTF:::A:FGLC::L:::::L:Q::S:FD
HQ1921A         :::IR::L:T::::::E:S::::L::Y::TT::::V::IA:::FT:A::L:::S:::A-:
Hmu1435         V:::::AS:AV::A::GI:::H:M::G::V:::A:F::F::V::::::SA:A:TIPPLSG
Hut2772         :::IR::Q::::::::GL:::H:M::Y::::M::FF:V:::L::T::::P:R::::::::

consensus       APDALSATGIETLAANIYFSYITFLTIGYGGIGPEGAAARVLAAMQGYLNVILFGLLIYT
#oth            3333334324332441211...1.1.1...31212.4212311222212112131.2213
rrnB0067        :E:Q:AVI:-----NG::Y:::S:S:::::::::I:WG:KL:::S::M::GL::T::TF:
HVO_B0354       -:A:VDK:TM:V:FD:V:Y:::S:S:V:::D:N:L:P:::::::S::M::GLF:T::TF:
HQ1921A         LSQ::N::STR::LL:V:::::::::::::::::L:LG::F:::ILV::::::A::F::S
Hmu1435         ::GLF:PE:LSI:YR::H::::::::::::Y:::::::::AM:G:EV:V::::S::VL:C
Hut2772         IA:FI:MG::::F:::LH::::::::::::NVVA::NLGL::VS:EA:AS:V:G::F::V

consensus       LIKR--SEI
#oth            .1..11112
rrnB0067        :F::VLGGS
HVO_B0354       :F::VLGGS
HQ1921A         :::::::::
Hmu1435         :::::::::
Hut2772         ::::::::L