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5 genomes BUD1841 14 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi

VNG0213

VNG1587

VNG5045

VNG5252

VNG6043

VNG6421

VNG6483

pNG5012

rrnB0008

rrnB0028

rrnB0122

HVO_0864

 - - -

hla2406

 -

HQ3558A

Pairwise sequence scores
Consensus score2602 HQ3558A HVO_0864 hla2406 pNG5012 rrnB0008 rrnB0028 rrnB0122 VNG0213 VNG5045 VNG5252 VNG6043 VNG6421 VNG6483 VNG1587
1560HQ3558A 2304 1669 1596 1548 1548 1548 1548 1560 1560 1560 1560 1560 1560 1560
1879HVO_0864 1669 2630 1962 1882 1882 1882 1882 1872 1872 1872 1872 1872 1872 1887
2185hla2406 1596 1962 2570 2161 2161 2161 2161 2185 2185 2185 2185 2185 2185 2193
2385pNG5012 1548 1882 2161 2569 2569 2569 2569 2385 2385 2385 2385 2385 2385 2385
2385rrnB0008 1548 1882 2161 2569 2569 2569 2569 2385 2385 2385 2385 2385 2385 2385
2385rrnB0028 1548 1882 2161 2569 2569 2569 2569 2385 2385 2385 2385 2385 2385 2385
2385rrnB0122 1548 1882 2161 2569 2569 2569 2569 2385 2385 2385 2385 2385 2385 2385
2602VNG0213 1560 1872 2185 2385 2385 2385 2385 2616 2616 2616 2616 2616 2616 2578
2602VNG5045 1560 1872 2185 2385 2385 2385 2385 2616 2616 2616 2616 2616 2616 2578
2602VNG5252 1560 1872 2185 2385 2385 2385 2385 2616 2616 2616 2616 2616 2616 2578
2602VNG6043 1560 1872 2185 2385 2385 2385 2385 2616 2616 2616 2616 2616 2616 2578
2602VNG6421 1560 1872 2185 2385 2385 2385 2385 2616 2616 2616 2616 2616 2616 2578
2602VNG6483 1560 1872 2185 2385 2385 2385 2385 2616 2616 2616 2616 2616 2616 2578
2578VNG1587 1560 1887 2193 2385 2385 2385 2385 2578 2578 2578 2578 2578 2578 2578 

338 symbols
consensus       ------RWMSPATLQDDPSVDSFFNVVETETLALFEHLSFEFLEEFDVFAPAETGRTRDH
#oth            11112222334321133313221222321112211111212113121111.131...12.
HQ3558A         ::::::-----------------------------------------MCS::SR:::QV:
HVO_0864        MQGAESVSSTTT:::NVA:L:E:LKAAA:::VP:::::E::::R:Y:::::CKR::::V:
hla2406         ::::::VST:ASI::EET:I:E::::MA::::::::::E:D:::::::::::RR::::::
pNG5012         ::::::--:DS::::NE:::E:::::A::::::::::::::::G::::::::::::::E:
rrnB0008        ::::::--:DS::::NE:::E:::::A::::::::::::::::G::::::::::::::E:
rrnB0028        ::::::--:DS::::NE:::E:::::A::::::::::::::::G::::::::::::::E:
rrnB0122        ::::::--:DS::::NE:::E:::::A::::::::::::::::G::::::::::::::E:
VNG0213         ::::ML::::::::::::::::::::::::::::::::::::::::::::::::::::::
VNG5045         ::::ML::::::::::::::::::::::::::::::::::::::::::::::::::::::
VNG5252         ::::ML::::::::::::::::::::::::::::::::::::::::::::::::::::::
VNG6043         ::::ML::::::::::::::::::::::::::::::::::::::::::::::::::::::
VNG6421         ::::ML::::::::::::::::::::::::::::::::::::::::::::::::::::::
VNG6483         ::::ML::::::::::::::::::::::::::::::::::::::::::::::::::::::
VNG1587         ::::::--::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       EPPELMRGFLHCYYKDIYGIRPVERELRNTVVWLSCGFDRPPSRDAVDRFLTDLEHVVNK
#oth            3..21211......211..1..21...1121..221.1.1.....11..........112
HQ3558A         Q::D:FC:::::::E:V::T:::T:::QDGL::YYY:L:K:::::TI::::::::::IDD
HVO_0864        K::::F::::::::ENV::T::IT:::Q:PL::RC:::::::::::::::::::::::DE
hla2406         H::A:F:A:::::::NV::::::T:::Q::::::::::::::::::::::::::::::DE
pNG5012         K:::ML::::::::R:::::::A::::Q::::::::::::::::::::::::::::::DE
rrnB0008        K:::ML::::::::R:::::::A::::Q::::::::::::::::::::::::::::::DE
rrnB0028        K:::ML::::::::R:::::::A::::Q::::::::::::::::::::::::::::::DE
rrnB0122        K:::ML::::::::R:::::::A::::Q::::::::::::::::::::::::::::::DE
VNG0213         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
VNG5045         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
VNG5252         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
VNG6043         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
VNG6421         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
VNG6483         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
VNG1587         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       VFDHLVEQAALRGLLDLTYCIDSTDVRAMPADQDASKCYDPTDDEYYHGYGCTIVSTGQK
#oth            1..1....1.3.....2..3....1121112112..12..1.12.1.1.1.....1..2.
HQ3558A         I::R::::T:T:::::D::A::::HIT:IQYNDA::WN::::AK:::Y:F:::::T::P:
HVO_0864        ::::::::::::::::S::R::::H:E:IQWNDE::WN::S:AE:H:Y:F::::::::A:
hla2406         :::R::::::C::::::::S:::::::T:::::::::G::::AE::::::::::::::::
pNG5012         ::::::::::R::::::::::::::::::::::::::::::::E:::Y::::::::::::
rrnB0008        ::::::::::R::::::::::::::::::::::::::::::::E:::Y::::::::::::
rrnB0028        ::::::::::R::::::::::::::::::::::::::::::::E:::Y::::::::::::
rrnB0122        ::::::::::R::::::::::::::::::::::::::::::::E:::Y::::::::::::
VNG0213         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
VNG5045         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
VNG5252         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
VNG6043         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
VNG6421         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
VNG6483         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
VNG1587         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       IPIAAEFTESKQAPEETAMRVTRDALAVAKPIWMVGDSAYDTLDWHDHLLAAGVVPVAPY
#oth            ........11...11.......1....12211.12......1.2...1..21....1...
HQ3558A         ::::::::Q::::SK::::::::::::IEQSM::L::::::V::::::::TV::::I:::
HVO_0864        ::::::::QA:::S::::::::::::::DT:::II::::::::Q:::F::D:::::::::
hla2406         ::::::::::::::::::::::C:::::E:::::L::::::::G::::::::::::::::
pNG5012         ::::::::::::::::::::::C:::::::::::::::::::::::::::::::::::::
rrnB0008        ::::::::::::::::::::::C:::::::::::::::::::::::::::::::::::::
rrnB0028        ::::::::::::::::::::::C:::::::::::::::::::::::::::::::::::::
rrnB0122        ::::::::::::::::::::::C:::::::::::::::::::::::::::::::::::::
VNG0213         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
VNG5045         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
VNG5252         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
VNG6043         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
VNG6421         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
VNG6483         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
VNG1587         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       NARNTDDPKDIEYRVEDRIEQHSEDVQLKQSTLDETYNRRTGVERTNESVKDCGLGRTHA
#oth            11..1.1.1..11.1.11.22....1.....2.221..1.11.....111.1.1..121.
HQ3558A         DP:::::::::NH:L:A::HE::::::::::V::KQ::H::::::::DAI:N:A:::GR:
HVO_0864        :P::::E:L::::::::Q::E::::L:::::V:E:::::::Q:::::DA:::::::HVR:
hla2406         ::::::::::::::::A::DE:::::::::::::::::::S::::::DA:::::::HVR:
pNG5012         ::::A:::::::::::::::K::::::::::I:NQ:::::::::::::::::::::::::
rrnB0008        ::::A:::::::::::::::K::::::::::I:NQ:::::::::::::::::::::::::
rrnB0028        ::::A:::::::::::::::K::::::::::I:NQ:::::::::::::::::::::::::
rrnB0122        ::::A:::::::::::::::K::::::::::I:NQ:::::::::::::::::::::::::
VNG0213         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
VNG5045         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
VNG5252         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
VNG6043         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
VNG6421         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
VNG6483         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
VNG1587         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       RGRVHARAQVFLALCLRLVVAITNYERGDNPGSPIITV
#oth            ...1...11........1.1....1.1..111123111
HQ3558A         :::::::TE::::::::I::::::::W::DLDREKL:L
HVO_0864        ::::::::::::::::::::::::D:::::::REMLR:
hla2406         :::::::::::::::::::I::::D::::::::TV::L
pNG5012         :::A:::::::::::::::::::::::::::::T::::
rrnB0008        :::A:::::::::::::::::::::::::::::T::::
rrnB0028        :::A:::::::::::::::::::::::::::::T::::
rrnB0122        :::A:::::::::::::::::::::::::::::T::::
VNG0213         ::::::::::::::::::::::::::::::::::::::
VNG5045         ::::::::::::::::::::::::::::::::::::::
VNG5252         ::::::::::::::::::::::::::::::::::::::
VNG6043         ::::::::::::::::::::::::::::::::::::::
VNG6421         ::::::::::::::::::::::::::::::::::::::
VNG6483         ::::::::::::::::::::::::::::::::::::::
VNG1587         ::::::::::::::::::::::::::::::::::::::