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5 genomes BUD1871 7 proteins
a Hsa
Halobacterium
sp. NRC-1
b Hma
Haloarcula
marismortui
f Hvo
Haloferax
volcanii
g Hbo
Halogeometricum
borinquense
h Hmu
Halomicrobium
mukohataei
i Hut
Halorhabdus
utahensis
j Hla
Halorubrum
lacusprofundi
q Nph
Natronomonas
pharaonis
x Hwa
Haloquadratum
walsbyi
-

rrnAC2882

rrnAC3139

-

Hbo2806

Hbo3620

Hmu2880

- -

NP0488A

HQ2315A

Pairwise sequence scores
Consensus score1506 HQ2315A Hbo2806 rrnAC3139 NP0488A Hbo3620 rrnAC2882 Hmu2880
748HQ2315A 1666 683 553 502 533 595 589
827Hbo2806 683 1656 454 472 563 694 648
795rrnAC3139 553 454 2201 509 1009 548 560
734NP0488A 502 472 509 1158 618 553 581
987Hbo3620 533 563 1009 618 2274 722 732
1101rrnAC2882 595 694 548 553 722 1887 1107
1051Hmu2880 589 648 560 581 732 1107 1403

311 symbols
consensus       ---------IMGDPVETTTP--------------------------------E-----LL
#oth            121331232344355453422222222233233233222223322222222222355534
HQ2315A         :::::::::MAS:QSSM:DS::::::::::::::::::::::::::::::::-::FEGMA
Hbo2806         :::::::::MS::EHSQ:::::::::::::::::::::::::::::::::::AYQPQS:S
rrnAC3139       MLVPLPVRE::RT::K:IS:SAPVIEAAQRLRDEDIGSLVVEDDGSCVGIIT:SDIVAVT
NP0488A         :::::::::---MTE:E:G:::::::::::::::::::::::::::::::::-:::::--
Hbo3620         MLVSIPVSEV:T:S::::::ETTAREAAVKLFEKEVGSLVVCRNGSPVGIIT:YDLTK::
rrnAC2882       MGVLRPAAP:T:T:NTRL:::::VRRRLPTAEAKPTPRFNTPTNKLPEQMSS:SPRNP::
Hmu2880         :::::::::-----------::::::::::::::::::::::::::::::::-:::::--

consensus       AAW-------TSVS--MFNSLVAANRAADAAFGVQ--------DLPVDDGG---------
#oth            423224234344435524453333333344353352122221343245242211122222
HQ2315A         T::IESSTAVSKNMAQ:YSNIA::::ELWSQTMAP:::::::A:S:SRES::::::::::
Hbo2806         S::LRASEHVQRS:GYL::G:IE::H:FI:SL:G:::::::::TSH:::E::::::::::
rrnAC3139       ::E::GDTRAL::GDV:AET::TVAPD::MQAA:DRLQTNNIKK:::VED:SLVGIVTTT
NP0488A         ---:::::::----::-------------------:::::::::V:IAA:E:::::::::
Hbo3620         ::G::TDLDT::::EF:SDP:ITIEHD::ISEAAKMLRAKQIEH:::T::DELVGVLAAV
rrnAC2882       DT:::::::::ET:SH::::V:::::::F::::::::::::::--QEEEN::::::::::
Hmu2880         ---:::::::----::::::V:::::::F:::::R::::::::--:D:::D:::::::::

consensus       -------------P---IEADE----------DRPEWEFESSVDTPGELGVGDRVEFSKT
#oth            111212122223423334263412222122233433.3225354553324..1424.2.4
HQ2315A         :::::::::::::-:::--D:S:::::::IAYSKSS:TTVQ::::VA::E:::E:V:R:E
Hbo2806         :::::::::::::-:::V:L:S:::::::ILET:HQ:S::R::NRYE:::::E::S:T:Q
rrnAC3139       DLSDYIPHLSRAVRMSNDQSQQKRFTRPDTLYENED:T:::YGTAD:-ID:::H::::::
NP0488A         :::::::::::::-:::-----:::::::::::::D::T::DI:--::PS:::TLR:::P
Hbo3620         DLSYYLPQISRPE:SAKP:QEAKYVVHPETAFEE::::::CRCI:R:HIV:::VA:::::
rrnAC2882       :::::::::::VT:AER::P:::::::::::::L:::HVSI:EEH::R:::::H:D:T::
Hmu2880         :::::::::GKPL:AER::::::::::::::::L:::HV:L:A:N:DR:::::::::T:R

consensus       ISEADVEAFAAASGDTNPLHLDDEFAEQTRFGGRIVHGTLVSGLISAALARLPGLTIYLS
#oth            2134..42..42.....1...1232.43...131.1..1.2211..1....1..321..1
HQ2315A         LTDS::H:::NI:::::R::::::::SD::::R:::::::A:::::S:::::::MIV:::
Hbo2806         L:SE::S:::TI::::::::::::::KR::::TP::::::I::::::::::F::V:::::
rrnAC3139       ::K:::::::E::::::R::::AT::DG::::R::::::::::I::::::::::::::::
NP0488A         V::::::R::L:::::::::::EAS:AG::::::::::G:IA:I::::::::::TVV::E
Hbo3620         :::E:::R:::S:::::R:::S::Y:K:::::K::A:::::A::::::::::::::::::
rrnAC2882       :::H::QQ:::::::::::::::::::::::R:::A:::::GS:::::::::::::::::
Hmu2880         ::DN::KQ:::::::::::::::D:::::::R:::A:::::G::::::::::::::::::

consensus       QDLEFHNPVRIGDRVTAECEVVEDLGDDRYRLTTRVRTDGGT-VIDGEAVVLID--DAPD
#oth            .1.3144112114211.3311313233421..3.416323244221.2.2.111112412
HQ2315A         :::D:ER::D::TT:E:TVR:A:T:DG:::::D:T:Q:ED::T::::::I::::TPP::E
Hbo2806         :::::LSAAEP:GTL::T::IT:AF:ES::::D:V:HNES:EKLA::::I::::::EP:E
rrnAC3139       :E:SYQG::D:DEE:::R:::::RIQ:N:F::A:A:DDSE:NC::E:D:::IS:::PI::
NP0488A         :::T:RS:::::ET::::L:::D::SEAK:::R:VA::::DA:AVE:T:T:::E::::--
Hbo3620         :E:T::A::E::S::::V:::I::::R:::::::D:Y:::E:HA:E:::::::::::L::
rrnAC2882       ::::::::::::::L:::::I::::::EQ:::::::LA:DEV:::::::::::::::L:E
Hmu2880         :::::::::::D::L:::I:I:::::::Q:::::::VD::DV::::::::::::::EM::

consensus       T----------
#oth            35333222222
HQ2315A         :DADADASTTE
Hbo2806         YTETF::::::
rrnAC3139       :A:::::::::
NP0488A         -::::::::::
Hbo3620         :VDVEVEEVAD
rrnAC2882       -::::::::::
Hmu2880         ES:::::::::