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5 genomes BUD1872 7 proteins
a Hsa
Halobacterium
sp. NRC-1
b Hma
Haloarcula
marismortui
f Hvo
Haloferax
volcanii
g Hbo
Halogeometricum
borinquense
h Hmu
Halomicrobium
mukohataei
i Hut
Halorhabdus
utahensis
j Hla
Halorubrum
lacusprofundi
q Nph
Natronomonas
pharaonis
x Hwa
Haloquadratum
walsbyi
-

rrnAC0816

-

Hbo3467

Hmu0089

- -

NP3036A

NP4634A

HQ1859A

HQ2485A

Pairwise sequence scores
Consensus score3277 NP4634A HQ1859A HQ2485A NP3036A Hmu0089 rrnAC0816 Hbo3467
2678NP4634A 3430 3158 3117 2067 1900 1944 1170
2699HQ1859A 3158 3437 3349 2048 1875 1923 1182
2696HQ2485A 3117 3349 3460 2040 1893 1925 1176
2470NP3036A 2067 2048 2040 3247 2076 2113 1272
2447Hmu0089 1900 1875 1893 2076 3265 2995 1884
2482rrnAC0816 1944 1923 1925 2113 2995 3277 1982
1614Hbo3467 1170 1182 1176 1272 1884 1982 2113

444 symbols
consensus       MTQTQALTKTLVFQLDIQSDNESLLHDARLEARRVYNETIRLAKDGWDWDRIEDVVEDDA
#oth            113311.1...1.1.12112111..2..2..1.1.11.11.1213.21.2512231121.
NP4634A         :::::::::::::P::V::G:::::::::::C:::F::VL::NY:::N::K::N:::QN:
HQ1859A         :::::::::::::P::V::G:::::::::::C:::FT:VL::NY:::::N:::::::QN:
HQ2485A         :::::::::::::P::V::G:::::::::::C:::FT:VL::NY:::::N:::::::QN:
NP3036A         --MQKS::::::::::PDESGQQ::D::F::::::::::::RT:N:D:::E:RQDL:S::
Hmu0089         ::TA:::V:::D:::::::::::::Y::T::::S::::::::::E:V:::TTP:C:A:::
rrnAC0816       ::DS:::V:::D:::::::::::::Y::T::::S::::::::::Q:V:::A:P:R:A:::
Hbo3467         ::DS:::V:::D:::N:::::::::Y::T::::S::::::::::E:V::EV:P:R:A:::

consensus       DLVQNTAQRIVDKALEAMENYYEYDDFGRPSHTKDGAYPLRANYEEGYNLFLEDD-TVRF
#oth            1..2..1.1113.1121121..1...223.111.1111...2..1.....1.1.113111
NP4634A         ::::::::::I:::FD:LD:::D:::W:::WY-:HETF:::M::G:::::::::E:::::
HQ1859A         ::::::::::I:::F::LTQ::D:::W:::WY-:HETF:::M::G:::::::::E:::::
HQ2485A         ::::::::::I:::F::LTQ::D:::W:::WY-:HETF:::M::G:::::::::E:::::
NP3036A         :::N::::LV:Q:S::::::::::::YNQ::::::::::::S::::::::::::::SI:Y
Hmu0089         :::K::T::V:A:::G:::::::::::SQ:::::::::::::::::::::S:T::GG:A:
rrnAC0816       N::K::T::V:A:::G::::::::::::K:::::::::::::::::::::S:T::GD:A:
Hbo3467         N::K::T::::S:::GS:::::::::::L:::::::::::::::::::::S:T::GD:A:

consensus       RISAKPYNHVKGELRGSDDQLD--ILRQAIESDDWHVGTAEALFRNGRAELHVNVTNTEA
#oth            ...11..1111.3.4.122311112.42.21213.21.....1311122...211.1111
NP4634A         ::::::::::::::::TQ::F:::L::::::D:::::::::::V:H::E:::AT:::ET:
HQ1859A         ::::::::::::::::TQ::F:::L:A::::D:::::::::::C::::E::::T:::ET:
HQ2485A         ::::::::::::::::TQ::F:LHL:T::MTG:::::::::::V::::E::::T:::ET:
NP3036A         ::::::::P:::T:Q::L:V:K::Q::T::::ET:R::::::MK:::NY:::I:I:H:::
Hmu0089         :::TE::K::::F:T:::AH::::::KT:LT::E:KI:::::::H:DD:::::::::::Q
rrnAC0816       :::::::K::T:V:K:::AN::::::QT:L:::E:KI:::::::H:DN:::::::::::Q
Hbo3467         :::::::::I::V:E:::VH::::::KS:L:::G:KI:::::::H:DN:::::::::::Q

consensus       EVRDKTDSRTVVGVDINEDCVALAALSEDGIEDSLVIDYPEIKEERHRYFTMRKRMQNAG
#oth            1.11.3221..2...1...11..11.211112212...1....11..........1.11.
NP4634A         ::GA::TTE::T::::::::::::::T:H:::::V:::::::::Q::::::::::::E::
HQ1859A         ::GA::AAE::I::::::::I:::::T:H:::::I::::::::::::::::::::::E::
HQ2485A         ::GA::AAE::I::::::::I:::::T:H:::::I::::::::::::::::::::::E::
NP3036A         :::::Q::::::::::::::::::S:H::D:VN:V:::::::::::::::::::::::S:
Hmu0089         T::::E:::::::::V:::N:::T:::G::VKRT::::F::::F:::::::::::V::::
rrnAC0816       T::::Q:::::::::V:::N:::T::::::::::::::F::::F:::::::::::V::::
Hbo3467         T::::N:::::::::V:::N:::T::::::V::T::::F::::F:::::::::::V::::

consensus       KDSFNDTFEDREERFVHDQLHKVSRRVVEWIQ--RFEKPVIVFEDLKDMRDDIDYGTRMN
#oth            12222121122.11..1.1..1...21...23111.2211...11122111212111111
NP4634A         QTG:::V:R:K:QQ:::::::T::::::::::::::DS:::::::::::::::E::::::
HQ1859A         QTA:::V:R:K:Q::::::::T::::::::::RL::DS::::::::T::::::E::::::
HQ2485A         QTA:::V:R:K:Q::::::::T::::::::::RL::NS::::::::T::::::E::::::
NP3036A         :S::DRA::QQ::::::::::::::Q::::VP:::::N:::::::::E:::S::::::::
Hmu0089         :::IH::L:G::::::R:R::::::HI:::S:::Q:::SC:::::::E:::S::::::::
rrnAC0816       :::IH::L:G::::::R:R::::::HI:::SR::Q::::C:::::::E:::S::::::::
Hbo3467         :::TH::L:G::::::R:R::::::HI:::SS::Q::::C:::-----------------

consensus       RRLHSLPFAKLRDFITYKAAFEGIPSDDINPEYTSQQCPV--CGHTERANRNKKRFKCRE
#oth            111122112212422211122411123322111111312311121121111211113153
NP4634A         ::::::::::::::::::::WR::::::VD:::::::::::::::::::::H::::::C:
HQ1859A         ::::::::::::::::::::WH::::::VD:::::::::::::::::::::H::::::::
HQ2485A         :::::V::::::::::::::WH::::::VD:::::::::::::::::::::H::::::::
NP3036A         ::::::::R:::E::::::::Q::::EE::::::::A:SLTE:E::T:::::::::::V:
Hmu0089         ::::H:::RA:QYYTS:::S:::::TAW::::::::R::M::::::::::::::::E:KS
rrnAC0816       ::::H:::RA:QFYTS:::S:::::TAW::::::::R::M::::::::::::::::N:WD
Hbo3467         ----------------------------------------::------------------

consensus       CEHQDHADRGAGVNIAQKGLRKQ-NRNVPALNSLPQVRK----LRRQASGAVDGPTVTHD
#oth            122111211313222231223222221111112112111111121121113123111334
NP4634A         ::::::::::::ISV:::W::T:ED:::::::T::::::WE:::::::::P::::::::H
HQ1859A         :::::::::::::SVG::W::::N::::::::T::::::WE:::::::::P::::::AS:
HQ2485A         :::::::::::::SV:::W::::N::::::::T::::::WELQ::::::::::::::VS:
NP3036A         :GR::::::N:AI:::K:::E:L::::::::::::::::::::V::::::C:NQ::::::
Hmu0089         ::::::S::S:S::::V::VK:L:DW:::::::::V:::::::V:::::::::A:::::S
rrnAC0816       :G::::S::::S::::V::VK:L:DW:::::::::V:::::::V::R::::::A::::QP
Hbo3467         -----------------------:---------------::::-----------------

consensus       TARGHQADGRRGVSD---------
#oth            133122311341111111111211
NP4634A         :E::::T::VS::::QSTGRSSGA
HQ1859A         ::Q::HP::I:::::QSTGRSSGA
HQ2485A         ::Q::HP::I:::::QSTGRSPGA
NP3036A         ::T::::::VV:::::::::::::
Hmu0089         :V::Y:::::M:::::::::::::
rrnAC0816       :V::Y:::::M:::::::::::::
Hbo3467         ---------------:::::::::