5 genomes BUD1873 5 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC2088 - Hbo0516 Hmu0377 - - NP0064A HQ1585A

Pairwise sequence scores
Consensus score	2306	Hbo0516	HQ1585A	NP0064A	rrnAC2088	Hmu0377
1462	Hbo0516	2330	1372	1058	1206	1144
1352	HQ1585A	1372	2314	1025	1044	1005
1505	NP0064A	1058	1025	2347	1209	1214
1882	rrnAC2088	1206	1044	1209	2299	1774
1820	Hmu0377	1144	1005	1214	1774	2258

312 symbols
consensus       --MRVVSLLPSATEIVYALGVEPVGVSHECDYPPAAREKPSVNRSRVD--PDASSGDIDE
#oth            1111..1....1..1121..11.211..1..1.111323.21221211112123232.12
Hbo0516         ::::::::::::::LL:G::A::L::::S::::::::A::VLTSTVIEYGD:RPPA:::R
HQ1585A         :::::::::::S:::LT::::D::::::S::::SSVH:L:TLTSTP:EYG::Q:AS:::S
NP0064A         MPPT::::::::::::A::::D:AAT::::::::SVADT:T:VE::I:::A::D:ET:::
rrnAC2088       ::::::T::::::::::::::::::::::::H:::::::::::::::::::T::::E:N:
Hmu0377         ::::::T:::::::::::::::::::::::::::::S:Q::::::::::::T:A::E:N:

consensus       QVAAAEE-GGVYAIDRETLAALDPDLIVTQGTCEVCAVDHVVVEEAVAELGLDADVLTLD
#oth            .2332.22212.111222.1311..1111.22.1.....323.32.11321112222.11
Hbo0516         :TRNV:-::ST:D::VDL::D:::::V:::A::::::::ASD:F:::ERR:I::::::::
HQ1585A         :MQSI:-::SA:DL:INA:S:::::::I::D::::::::STA:H::::AHDIN::IM::H
NP0064A         ::HE::TD:::::::::::::V:::IVIS::I:::::::T:Q::A:I:D::::CRLV:T:
rrnAC2088       ::::V::SD:::::::::::E:E::::::::V:D:::::::::A:::E:::::T::::::
Hmu0377         ::::::::E:::::E:::::S::::::::::V:D::::::::::D:::::::::E:::::

consensus       PHSLDDILEDIERVGAALGRDDRAAELRADLRSRVAAVEDRAAR---AETRPRVAVLDWT
#oth            1..121213113.1.312.3322.331223.23.22212211221113231.2111...1
Hbo0516         ::::S:::D:LT:::E:I:AS:T::S:::E:EA:IER:T::::A::::MD:::T::::::
HQ1585A         ::::T:V:A::::::T:V:VP:L:TDY:HQ:TT::E:LTE::::VAAES::::TVA::::
NP0064A         :::V::::G::::I:::::K:R::NR:A:A:E::MDR:A::T:G:::RSR::T::::::L
rrnAC2088       V::::GLF:S:H:::::V:::E:::::V::::E::::::TT:T::::G::T::::::::L
Hmu0377         V:::::LF:S:Q:I:DV:::GE::S::VG:::::::E::TT:G::::::ST:S:::::::

consensus       DPVMAAGHWVPEMIERAGGEYGLEDDGAHSRPREWDDIREYDPEVLIVAPCGFDLAQTRE
#oth            2.2111......1112...11.1333.32.2.12.3212111.11.211....1121331
Hbo0516         :::I:G:::::::::::::TP::VT::P-:T:QH:::V:AF:::::::::::::VERGTD
HQ1585A         ::II:G::::::L:::::::P::I:G:S-:T:QR:V::E:FA::::L::::::E:SRAI:
NP0064A         S:P:V:::::::LV:::::::::A:P:DA:M::::AT::::::D::VA:::::::E::AD
rrnAC2088       :::::::::::::::M:::T::M:E::::::::::EEVV:::::::VA::::::V:::::
Hmu0377         E:::V::::::::VAS::::::::SA::::::::::E::A::::R:::S::::::::I::

consensus       NLTDL--TERPGWADLTAVRNGRVYAIDGHHYVNRPGPRLVDTLEFLAALCHPDAFDTPA
#oth            132111113211123.3..22.31222..1111..1.1.1111..3213221.14113.2
Hbo0516         AIS::::RSKD:::N::::QD:N::VV::NG:::::::::::S::LF:SCI:::R:EA::
HQ1585A         AVESIKS:ADDA:DT:P::ET:V:G::::NG::::::::::::::II:G::::T:::::D
NP0064A         :R:::::::::::N::R:::::::::M::::LT::::I:VLE:::T:::::A:TER:S::
rrnAC2088       ::::::::R:::FD::::::D::A:V:::::::::S::::::::::::::V:::L:E::P
Hmu0377         ::::::::::::::E:S:::::H:TLV::::::::S:::::::::::GWAI:::P::R:P

consensus       RDAVRRLGAV--
#oth            233123233232
Hbo0516         PAV:::V:::PP
HQ1585A         SSIA:S:ND:::
NP0064A         PWMA:P:A:DG:
rrnAC2088       ::::VE::T:RA
Hmu0377         ::::S:----::