5 genomes BUD1881 5 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC0953 - - Hmu2969 Hut0132 - NP1000A HQ2462A

Pairwise sequence scores
Consensus score	977	Hut0132	Hmu2969	NP1000A	HQ2462A	rrnAC0953
728	Hut0132	1009	601	612	593	590
799	Hmu2969	601	1039	844	604	595
806	NP1000A	612	844	1061	607	598
725	HQ2462A	593	604	607	1162	673
737	rrnAC0953	590	595	598	673	1048

154 symbols
consensus       ----------------MSERNVLGEPLEPCSTDPETGFERDGHCRAHPRDRGRHELCAVM
#oth            11111111112221133321..1.12.2..13111..13...2.34222.1.1.12..21
Hut0132         ::::::::::MSQSDPDAQ::::::A:::::KTLS::YQ:::::T:V:G:::S:H:::K:
Hmu2969         :::::::::::::::::::T::::::::::::::::::::::C:GE::Q:::::::::::
NP1000A         :::::::::::::::::D:T:::::::::::::::::::::::::C::Q:::::::::M:
HQ2462A         MSNHETNEEVSPESDDLRD:::H::::Q::GR:::::YL::::::NLR::P::::V:::L
rrnAC0953       :::::::::::::::ME:::::::GE:A:::M::::::M:::Y:YPLQ::P::::I::::

consensus       TQEFLEFSKAQGNDLVTPRPQLNFPGLDPGDRWCLCVGRWVEAHEAGR--------APPV
#oth            .31..21.231....3....2.2...13.1.2..1.11..3..12.32222211111...
Hut0132         ::D:::::R:::::::::::::D:::VN:K:H::::::::L::::::V::::::::::::
Hmu2969         :D:::Q:::RR::::L::::::D::::E::::::::L::::::LR:T:REQLPETTV:::
NP1000A         :E:::T::ADR::::M::::E:E::::::::::::::::::::L::V:NQHIPETTV:::
HQ2462A         ::::::Y::S:::::T::::S::::::T:::::::::P::A:::D:DC::::::::::::
rrnAC0953       :A::::Y:::::::::::::E::::::::::S::V::P::I:::::::::::::::::::

consensus       VLDATNEAVLDDVELETLQAHAADE---------
#oth            2.2..1.3.11212.2..121.212321221111
Hut0132         ::E::::T::EEI:::::::::VE::::::::::
Hmu2969         :::::::::::T:::A::E:::Y:R:::::::::
NP1000A         I:A::::S:::T:P::::::::Y::P::::::::
HQ2462A         :::::S:::I::IP:S::ESY::E:WGDLP::::
rrnAC0953       N::::S:D::E::S:::::EY:::GDSDADATAE