5 genomes BUD1903 5 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC3536 - - Hmu1004 - hla2480 NP0840A HQ1675A

Pairwise sequence scores
Consensus score	626	NP0840A	HQ1675A	hla2480	rrnAC3536	Hmu1004
401	NP0840A	672	322	329	345	315
454	HQ1675A	322	743	376	370	371
454	hla2480	329	376	702	391	373
510	rrnAC3536	345	370	391	644	500
503	Hmu1004	315	371	373	500	650

110 symbols
consensus       -------MIEVASAL----------LGAAAAFVLLAVVVLYRVVAGPTMHDRVIAVNVVG
#oth            1111111122343113222222221323.24222211331..223...31...2.1.13.
NP0840A         ::::::::T:Y:::AM:::::::::VLG::VV:V:T:A::::::::::T::::V:I::I:
HQ1675A         MTASVIAI:Q:NIGASLTEPVEAILI:::IILI:S::I:S::I:F::::Q:::::::S::
hla2480         ::::::::SV:D:::VAGYTLADFL:L:::G:TV::IGM:::A:K::::Q:::L::::L:
rrnAC3536       ::::::::::FEV:::::::::::::AI:S::::F:I:S::::F::::D:::::::::M:
Hmu1004         ::::::::::LTT::::::::::::Q:V::L::CF:::A::::YQ:::A:::::::::::

consensus       TNTVIAIALLAAALDRPLFLDIALVYALLNFLLSIAISKFNVERGGVL--
#oth            .2..121.21111113131..1.1...2...1111.211.2112.1.211
NP0840A         :S:::V::FV::G::::EY::::I:::V:::V::L:VGR:AYRD:E:KWR
HQ1675A         :T::VVL::::::::::G:::::::::M::::M:::::::T::::::I::
hla2480         ::::VIL:I:S:::SE:T::::::::::::::MA::::::T:::::::::
rrnAC3536       :::::::::VSG:::K::::::::::::::::::::F::::::H::::::
Hmu1004         :::::::::::G:F:DQ::::V::::::::::::::F:::::::::::::