5 genomes BUD1904 5 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC3535 - - Hmu1003 - hla2479 NP0838A HQ1676A

Pairwise sequence scores
Consensus score	789	NP0838A	hla2479	HQ1676A	rrnAC3535	Hmu1003
490	NP0838A	855	408	420	398	398
510	hla2479	408	792	384	431	410
563	HQ1676A	420	384	801	467	489
625	rrnAC3535	398	431	467	774	584
657	Hmu1003	398	410	489	584	808

122 symbols
consensus       MEPLEW----LIVALALAGAFFGFVAAIGVLRLPDVYTRAHAASKSDTLGAVLALAAVAL
#oth            .22333111121.31312.3..23.132.22....1.1.2.11111...11113121111
NP0838A         :TLVTA:::::::L:VVL:V::TL:::V:::::::::::S:::T:A:::::GF:I:::G:
hla2479         ::T::TARMG::::F::L:L::S::SMT:::::::::S:::T::QA:::::GFG::::::
HQ1676A         :S::NI::::IA:V:I:::T:::I::T:::I::::L::::::T:::::::I::T:SG:::
rrnAC3535       :T:T::::::A::::::I:::::G::S::IV:::::::::::::::::::::::IG:A::
Hmu1003         :::IG::::::A:G:GV::::::::::V:LV::::::::T:::::::::A:::S::GA:I

consensus       AIGTELATIKAVLLLVFIFLTNPTAAHAIARAAYDQGIEPWTTDDTE---------D-GD
#oth            2112332221211.12.212.........1...3212231..22.323111111132321
NP0838A         YF::AGELVR:G::::::YV:::::::::T::::S:DVDV::V::NDTGTDTASAA:G::
hla2479         :::W:A:GV:S::::F:::V:::::::::::::FEE:TV:::EG:--:::::::::-:-E
HQ1676A         VF::GVT:A:T:::AI:V:I:::::::::T::::::N:A::::-:::I:::::::KPE::
rrnAC3535       ::Q:D:::::::F::::M:::::::::::::::Q:::::::::G:E::::::::::-:-:
Hmu1003         ::QS:::::::::::::::::::::::::::::D:::::::::::::V:::::::T:SA:

consensus       DQ
#oth            32
NP0838A         S:
hla2479         RR
HQ1676A         ::
rrnAC3535       KS
Hmu1003         :S