Home |  Text search
4 genomes BUD1936 4 proteins
a Hsa
Halobacterium
sp. NRC-1
b Hma
Haloarcula
marismortui
f Hvo
Haloferax
volcanii
g Hbo
Halogeometricum
borinquense
h Hmu
Halomicrobium
mukohataei
i Hut
Halorhabdus
utahensis
j Hla
Halorubrum
lacusprofundi
q Nph
Natronomonas
pharaonis
x Hwa
Haloquadratum
walsbyi
-

rrnAC0552

HVO_2220

Hbo3631

Hmu1345

- - - -

Pairwise sequence scores
Consensus score6175 rrnAC0552 Hmu1345 HVO_2220 Hbo3631
4089rrnAC0552 6319 3756 2591 2701
4276Hmu1345 3756 6131 2774 2799
4260HVO_2220 2591 2774 6323 3858
4128Hbo3631 2701 2799 3858 6128

858 symbols
consensus       -MRDW---RSTSSPEASERADGGARVGRDESESDRA-DETERLDDARADGGEAP----A-
#oth            113122222221222223.32112222312222322132122133222212332112212
rrnAC0552       ::SK:NPLD:EDG:PDG::T:::VTE:::G:::E:GRPS::A:QEEQ:A:ETE:DPER:E
Hmu1345         ::F::::::::::T::ET:S:::EA::E::QART:Q:ELERQ:SQ:::ERD::I::::-:
HVO_2220        MDD:SQLR:RA::VR::V::AL:::ATD::::::A:::::A:V::::S:::GT:::SV:V
Hbo3631         ::::N:::HG::A::P:L:ERLA:::FKRDTGESS::Q::::VG---T:::SVV::::-:

consensus       --ARREALADALTAERAPAAALERAADDLSAAVAANADGDLTVRPDVPDDPAAARLYEAL
#oth            22333133223222212232112323121221233221...1121121122231312221
rrnAC0552       LK:QC:Q::AE:EQ:::DRR:::T:V:H:ATVARE::::::::K:GE:PIET::P::::Y
Hmu1345         ::ED::RVRET:::::ER:ET::::IE:::SV:::::E::::ET:GGA:VA:VSE::S:Y
HVO_2220        ESG:G:SP::DVA:SS::D::ALDGL::F:::IERCIE::::::V:::::::L::HGRL:
Hbo3631         ::-SPD:TT::T:DDSS:K:::---:EEFT:::NQFT::::S::V::::::EM:Q:A:S:

consensus       NDLLAEWRDTMARVDVFADQVSASTEQVDDRLESSRSASRNVSDAVDGIAAGARRQSESI
#oth            21.12.1321133122.23..211.12.2222221121..3.121.12.13.122.2121
rrnAC0552       DE::R::T::VD:MAS:SE::T:A:::::T::G:VK::::D::G::GE:ST:SDE:RDE:
Hmu1345         R:::::::::VET:S::GG::AS::::::E::D:VKG:::E::::::::SS:S:::N:R:
HVO_2220        :E:FE::QTA:RN::A:::::::::RI:A:AA:E::EE::S:AAS::::::::::::::V
Hbo3631         :::F::LHG:::D:::::K:::::::S:V:SV:D::::::::::S::D::E::TQ:::::

consensus       NEIADEMRNLSATIEEIAASANEIADATGDAAARGDQARRAAEEAIDELDAIAERTDATV
#oth            32111..11....1..1.11.1.1132122.231.221231.22.212.231322232..
rrnAC0552       QS:S::::::::::::::SA:::V::TS:K:SV::ES:LES:SS:MTT::QLTDNAE:::
Hmu1345         :D:::::EA::::::::::::::V:T:::::::Q:::::SS:T::RT::ERL:A:SSE::
HVO_2220        E:V:::::::::::::V::::D::RH::DE:VE:::RGK::::T:::::AV:G:::::::
Hbo3631         D:V:N::::::::V::V:S::D:::SS:S:::T::Q:::D:::::::G::::D:Q:QR::

consensus       EQVERLNDLIDDIEGIVTFISDIADQTNILALNANIEAARAGEAGAGFAVVADEVKSLAT
#oth            22123.111121.121122.111.1...2.....1.....11.2.3..1...2...2..2
rrnAC0552       DK::Q::::LS:::E::D::T:V:::::M::::::::::::::S:D::::::E:::::::
Hmu1345         ::I::::::LTE::D::E::T:V:::::V:::::::::::V::D:E::G:::S:::E::S
HVO_2220        :R:AE:D:H::::T::A:K:::::E:::::::::S::::::::::S::::::::::A::E
Hbo3631         S::DS::E:::::T:V::Q::E::E:::::::::S::::::N::::::::::::::::::

consensus       ETQEATADIEASIEEVREQAEATVEDIHDTRERVDRTSETIEEALDALDAVVSDVEETNA
#oth            ..12..21.132.221121121..13211111112322211211123.131.2211.213
rrnAC0552       ::K:::DE:AT::Q::H:::D:::SEM::::DS:ED:RSSVAS:::E::::::M:::VDS
Hmu1345         ::KR:::E::D::DR:H::::::::TV:E:S:S::::HD:V:SVT:G:ER::GQ:::IDT
HVO_2220        :::A::::::ST::T::TRSA::::::T::S::L:EG::::Q:::S:::G::::L::::G
Hbo3631         ::::::E::::A:::I:A:S:E:::G:TEA::::ATE::::::::GS::EM:E::Q::::

consensus       SVQEIDDATDSQAASTQEVVSQADAVGAISDETAADAAVAADAARRQTTELAEASTRVSA
#oth            .21..11...1..312..1.11113.13..22..23.221131.12..11.1.12.2121
rrnAC0552       ::::::::::T::D:::::::MV:D:EG::AR::EE::::::::AD:::::::V:::::T
Hmu1345         :I::::E::::::E::::I::MVN:::D:::D::S::E:::T:::T:::::::V:::::T
HVO_2220        :LH::S::::::::TS::::::::G::E:::::::L::D::GS:::::VS:S::V:KID:
Hbo3631         :::::S:::::::TTA::::G:::E:::::E::::Q:TTVVKS::::::S:S::M:N:N:

consensus       LSERADHLRASLDDYEL--GAAAADAGATVVQFWHAMGGEKALLLEELAREFNAQHDGIR
#oth            .211.23.3312.212.11221212323.1.1...1.1.2.1211.1112..1221.113
rrnAC0552       :T:::ES:D::::SF::AT:::::NTNG:::E::::::::::::::::V:::ES:T:::S
Hmu1345         :::::GT:ESTF:::::::ADET::ED::::E:::::::::G::::::::::E::T::VV
HVO_2220        ::DQ:::::D:I:::R:::H:E:T:S:Q:::::::G:S:D::AV::S:VD::::D:::V:
Hbo3631         :A:Q::V:QET::E:D::::K:ETV::K:I:::::::S:S::I:M:SF:E:::DE::D:H

consensus       VALSSKGSYRGTLDATLAAARNGSPPAIAQIFEIGTTRARDSGAFTPVESLLP-RAHADS
#oth            23221..1....1..112..11.2..11..11.1..2..1...3.2...21.12321322
rrnAC0552       L::R:::::::::::::N::E::N:::::::::::::::::::Y:R:::E::::T::I::
Hmu1345         IS:::::::::::::A:T::E::::::::::::::::::::::Q:V:::R::S:QE:V::
HVO_2220        :DTA::::::::F::::::::S:T::T:::LY:V::Q::L::::::::::V::D::S:GE
Hbo3631         :HM:P::N::::F:::M::::S::::TV::L:::::K::L:::V::::::V::AETSTSD

consensus       LLDPIANYYRFDGTLHSLPFNASNPVLYYNADAFERAGLDPDRPPETLDDVRSAAETLVD
#oth            .11211....2..1.1.1...1....12..1...11.....13..1.122112.112212
rrnAC0552       ::::VT::::::::::::::::::::MA::R:::KQ::::::S:::::A:::::::::::
Hmu1345         ::::V::::::::::::::::::::::V::R:::::::::::::::::SA::D:S:RI::
HVO_2220        :VPE::::::H::A:W:M::::::::::::::::::::::::D::A:F:Q:T:::A::KT
Hbo3631         :VPS::::::D::::W:::::S:::::::::::::::::::SN::::F::LTQ:::KV:E

consensus       SGAVDYGATFANYSWFVEQWFAEADECLVDADNGRSGTATTANLDGDFGQRLFEWWRDLE
#oth            2.2211.111......1.....2.113.1.22...2.211111.11321332.2..2112
rrnAC0552       R:G::A:I:::::::::::::::::QL:::KN:::::AP:ESY:::E:AHN::D::QG::
Hmu1345         A:VSE::I::::::::::::::::::P:::N::::A:RP:::::S:S:::S:::::::MS
HVO_2220        ::::::::AW::::::::::::A:G:::F::::::::::R:S::::PV:T:V::::::::
Hbo3631         :::AE::::W::::::I:::::T:G:T::::S:::D::::::::SS:T:ETI:R::S::A

consensus       RNGLLFDPGIEARGAAREAFLDGDAAMLIDSSSSLASIESGAA-RGFNAETGRFPALDD-
#oth            231122...1...12..11.2112....11.1.12311121.1211.3121.1..11121
rrnAC0552       AD::YH:::::::::::TH:AEEN:::::G:T:::N::::S:D:--:DVG:::::V::::
Hmu1345         ES:YHY:::::::::::T::H::::::::G:T:::TE:::::::--:PV::::::V::::
HVO_2220        ::D::::::V:::RD::::::::R::::V:::::A::VVR:::D:::T::V:::::PGSS
Hbo3631         :T::::::::::::R:::::::::::::V::::NTL:VVE::DE:::::SV:K:::PGT:

consensus       REGVLVGGASLWVADDVSARVHEAAGEFLAWLTEPAQQRRWHRETGYFPVHADAIPQLRA
#oth            11..1........1.21232222.111.11...2.1..1...12.......321223..3
rrnAC0552       :T:::::::::::G:E::EG::::V::::T::::::::::::Q::::::::::::::::S
Hmu1345         :T:::::::::::G::H:TA::D:VS:::T:::Q::::Q::::::::::::EG:::E:::
HVO_2220        ::::V::::::::::G:ES:KRA:::::I::::R:E:::::::R:::::::RRTRGL::D
Hbo3631         Q:::V::::::::::::P::EQ::::R::::::::E::::::QQ:::::::G::ERM::R

consensus       AGWFEENPHFATAFDQLAETRDTPATRGARIGPFDTVRTIIEEGLSELDDGRSVAAVLER
#oth            11..11112111.11..3.13..21.1..11...2.....11112221232122332.23
rrnAC0552       :D:::Q:::YR::::::T:::::T:::::Q::::::::::::DAADSM:GPD::PSA:K:
Hmu1345         :::::::T:Y:::L:::M::T::IG::::Q::::::::::::::VER::TTD:T:ET::S
HVO_2220        D:::D:H:G::V::::::::D:::::::::V:::T:::::VS::::::F:::DLD:::AT
Hbo3631         D:::::H:E::V::E::N:SQ:::::C:::::::S::::::S::::::IE::E:ER:::E

consensus       MDEQVAARLSEYDE----
#oth            211.1322.22.232211
rrnAC0552       L:T::TKQ:ER::SGR::
Hmu1345         I:::I::T:DS:Q-::::
HVO_2220        :::::S::::::EHSANR
Hbo3631         :N:::EY:::::::::::